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La ricerca find articoli where soggetti phrase all words 'structure prediction' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 1087 riferimenti
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    1. Meiler, J; Muller, M; Zeidler, A; Schmaschke, F
      Generation and evaluation of dimension-reduced amino acid parameter representations by artificial neural networks

      JOURNAL OF MOLECULAR MODELING
    2. Lee, J; Ripoll, DR; Czaplewski, C; Pillardy, J; Wedemeyer, WJ; Scheraga, HA
      Optimization of parameters in macromolecular potential energy functions byconformational space annealing

      JOURNAL OF PHYSICAL CHEMISTRY B
    3. Malliavin, TE; Barthe, P; Delsuc, MA
      FIRE: predicting the spatial proximity of protein residues from 3D NOESY-HSQC

      THEORETICAL CHEMISTRY ACCOUNTS
    4. Novichkov, PS; Gelfand, MS; Mironov, AA
      Gene recognition in eukaryotic DNA by comparison of genomic sequences

      BIOINFORMATICS
    5. Afonnikov, DA; Oshchepkov, DY; Kolchanov, NA
      Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions

      BIOINFORMATICS
    6. Maggio, ET; Ramnarayan, K
      Recent developments in computational proteomics

      DRUG DISCOVERY TODAY
    7. Erk, P
      Crystal design of organic pigments - a prototype discipline of materials science

      CURRENT OPINION IN SOLID STATE & MATERIALS SCIENCE
    8. Flamm, C; Hofacker, IL; Maurer-Stroh, S; Stadler, PF; Zehl, M
      Design of multistable RNA molecules

      RNA-A PUBLICATION OF THE RNA SOCIETY
    9. Rogic, S; Mackworth, AK; Ouellette, FBF
      Evaluation of gene-finding programs on mammalian sequences

      GENOME RESEARCH
    10. Shenderovich, M; Ramnarayan, K; Kagan, R; Hess, P
      Structural pharmacogenomic approach to the evaluation of drug resistant mutations in HIV-1 protease

      JOURNAL OF CLINICAL LIGAND ASSAY
    11. Zhou, ZH; Baker, ML; Jiang, W; Dougherty, M; Jakana, J; Dong, G; Lu, GY; Chiu, W
      Electron cryomicroscopy and bioinformatics suggest protein fold models forrice dwarf virus

      NATURE STRUCTURAL BIOLOGY
    12. Bonneau, R; Baker, D
      Ab initio protein structure prediction: Progress and prospects

      ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE
    13. Mirny, L; Shakhnovich, E
      Protein folding theory: From lattice to all-atom models

      ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE
    14. Kajava, AV
      Review: Proteins with repeated sequence - Structural prediction and modeling

      JOURNAL OF STRUCTURAL BIOLOGY
    15. D'Alfonso, G; Tramontano, A; Lahm, A
      Structural conservation in single-domain proteins: Implications for homology modeling

      JOURNAL OF STRUCTURAL BIOLOGY
    16. O'Donoghue, P; Amaro, RE; Luthey-Schulten, Z
      On the structure of hisH: Protein structure prediction in the context of structural and functional genomics

      JOURNAL OF STRUCTURAL BIOLOGY
    17. Filippini, F; Rossi, V; Galli, T; Budillon, A; D'Urso, M; D'Esposito, M
      Longins: a new evolutionary conserved VAMP family sharing a novel SNARE domain

      TRENDS IN BIOCHEMICAL SCIENCES
    18. Rigden, DJ; Bagyan, I; Lamani, E; Setlow, P; Jedrzejas, MJ
      A cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus is actually a broad specificity phosphatase

      PROTEIN SCIENCE
    19. Fairbrother, WJ; Gordon, NC; Humke, EW; O'Rourke, KM; Starovasnik, MA; Yin, JP; Dixit, VM
      The PYRIN domain: A member of the death domain-fold superfamily

      PROTEIN SCIENCE
    20. Dastmalchi, S; Morris, MB; Church, WB
      Modeling of the structural features of integral-membrane proteins using reverse-environment prediction of integral membrane protein structure (REPIMPS)

      PROTEIN SCIENCE
    21. Tovchigrechko, A; Vakser, IA
      How common is the funnel-like energy landscape in protein-protein interactions?

      PROTEIN SCIENCE
    22. Zhao, H; Chen, MH; Shen, ZM; Kahn, PC; Lipke, PN
      Environmentally induced reversible conformational switching in the yeast cell adhesion protein alpha-agglutinin

      PROTEIN SCIENCE
    23. Macdonald, JR; Johnson, WC
      Environmental features are important in determining protein secondary structure

      PROTEIN SCIENCE
    24. Wrabl, JO; Larson, SA; Hilser, VJ
      Thermodynamic propensities of amino acids in the native state ensemble: Implications for fold recognition

      PROTEIN SCIENCE
    25. Jacoboni, I; Martelli, PL; Fariselli, P; De Pinto, V; Casadio, R
      Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor

      PROTEIN SCIENCE
    26. Geourjon, C; Combet, C; Blanchet, C; Deleage, G
      Identification of related proteins with weak sequence identity using secondary structure information

      PROTEIN SCIENCE
    27. Bujnicki, JM; Elofsson, A; Fischer, D; Rychlewski, L
      LiveBench-1: Continuous benchmarking of protein structure prediction servers

      PROTEIN SCIENCE
    28. Jayasinghe, S; Hristova, K; White, SH
      MPtopo: A database of membrane protein topology

      PROTEIN SCIENCE
    29. Krath, BN; Hove-Jensen, B
      Implications of secondary structure prediction and amino acid sequence comparison of class I and class II phosphoribosyl diphosphate synthases on catalysis, regulation, and quaternary structure

      PROTEIN SCIENCE
    30. Liepman, AH; Olsen, LJ
      Peroxisomal alanine: glyoxylate aminotransferase (AGT1) is a photorespiratory enzyme with multiple substrates in Arabidopsis thaliana

      PLANT JOURNAL
    31. Major, F; Griffey, R
      Computational methods for RNA structure determination

      CURRENT OPINION IN STRUCTURAL BIOLOGY
    32. Sreekumar, KR; Aravind, L; Koonin, EV
      Computational analysis of human disease-associated genes and their proteinproducts

      CURRENT OPINION IN GENETICS & DEVELOPMENT
    33. Cho, YR; Walbot, V
      Computational methods for gene annotation: the Arabidopsis genome

      CURRENT OPINION IN BIOTECHNOLOGY
    34. Tobiason, DM; Buchner, JM; Thiel, WH; Gernert, KM; Karls, ACG
      Conserved amino acid motifs from the novel Piv/MooV family of transposasesand site-specific recombinases are required for catalysis of DNA inversionby Piv

      MOLECULAR MICROBIOLOGY
    35. Fromm, KM
      A logical concept of structure prediction derived from supramolecular polymers of alkaline earth metal halides formed by hydrogen bonding and complexation of the metal ion

      CHEMISTRY-A EUROPEAN JOURNAL
    36. Spindler, KD; Przibilla, S; Spindler-Barth, M
      Moulting hormones of arthropods: Molecular mechanisms

      ZOOLOGY-ANALYSIS OF COMPLEX SYSTEMS
    37. Kohlbacher, O; Burchardt, A; Moll, A; Hildebrandt, A; Bayer, P; Lenhof, HP
      Structure prediction of protein complexes by an NMR-based protein docking algorithm

      JOURNAL OF BIOMOLECULAR NMR
    38. Tan, C; Chang, L; Shen, S; Liu, DX; Kwang, J
      Comparison of the 5 ' leader sequences of North American isolates of reference and field strains of porcine reproductive and respiratory syndrome virus (PRRSV)

      VIRUS GENES
    39. de la Cruz, X; Calvo, M
      Use of surface area computations to describe atom-atom interactions

      JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
    40. Bienstock, RJ; Barrett, JC
      KAI1, a prostate metastasis' suppressor: Prediction of solvated structure and interactions with binding partners; Integrins, cadherins, and cell-surface receptor proteins

      MOLECULAR CARCINOGENESIS
    41. Kiss, H; Kedra, D; Kiss, C; Kost-Alimova, M; Yang, Y; Klein, G; Imreh, S; Dumanski, JP
      The LZTFL1 gene is a part of a transcriptional map covering 250 kb within the common eliminated region 1 (C3CER1) in 3p21.3

      GENOMICS
    42. Meller, J; Elber, R
      Linear programming optimization and a double statistical filter for protein threading protocols

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    43. Forcellino, F; Derreumaux, P
      Computer simulations aimed at structure prediction of supersecondary motifs in proteins

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    44. Lu, H; Skolnick, J
      A distance-dependent atomic knowledge-based potential for improved proteinstructure selection

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    45. Xu, D; Baburaj, K; Peterson, CB; Xu, Y
      Model for the three-dimensional structure of vitronectin: Predictions for the multi-domain protein from threading and docking

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    46. Briggs, JAG; Torres, J; Arkin, IT
      A new method to model membrane protein structure based on silent amino acid substitutions

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    47. Brown, LM; Gonzalez, RA; Novotny, J; Flint, SJ
      Structure of the adenovirus E4 Orf6 protein predicted by fold recognition and comparative protein modeling

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    48. Kolinski, A; Betancourt, MR; Kihara, D; Rotkiewicz, P; Skolnick, J
      Generalized comparative modeling (GENECOMP): A combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    49. Zhang, CT; Zhang, R
      A refined accuracy index to evaluate algorithms of protein secondary structure prediction

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    50. Pan, XM
      Multiple linear regression for protein secondary structure prediction

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    51. Zhao, SR; Goodsell, DS; Olson, AJ
      Analysis of a data set of paired uncomplexed protein structures: New metrics for side-chain flexibility and model evaluation

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    52. Gan, HH; Tropsha, A; Schlick, T
      Lattice protein folding with two and four-body statistical potentials

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    53. Gibbs, N; Clarke, AR; Sessions, RB
      Ab initio protein structure prediction using physicochemical potentials and a simplified off-lattice model

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    54. Bonneau, R; Strauss, CEM; Baker, D
      Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    55. Naderi-Manesh, H; Sadeghi, M; Arab, S; Movahedi, AAM
      Prediction of protein surface accessibility with information theory

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    56. Skolnick, J; Kihara, D
      Defrosting the frozen approximation: PROSPECTOR - A new approach to threading

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    57. Reddy, BVB; Li, WW; Shindyalov, IN; Bourne, PE
      Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    58. Gilis, D; Rooman, M
      Identification and ab initio simulations of early folding unit in proteins

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    59. Pei, JM; Grishin, NV
      GGDEF domain is homologous to adenylyl cyclase

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    60. Li, X; Pan, XM
      New method for accurate prediction of solvent accessibility from protein sequence

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    61. Shan, YB; Wang, GL; Zhou, HX
      Fold recognition and accurate query-template alignment by a combination ofPSI-BLAST and threading

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    62. Johnson, MA; Snyder, WB; Cereghino, JL; Veenhuis, M; Subramani, S; Cregg, JM
      Pichia pastoris Pex14p, a phosphorylated peroxisomal membrane protein, is part of a PTS-receptor docking complex and interacts with many peroxins

      YEAST
    63. Kothekar, V; Shankar, S; Lomash, S; Sharma, YD
      Computer modeling of small heat-shock metalloprotease of the human malariaparasite Plasmodium vivax

      JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
    64. Ota, S; Li, WH
      NJML+: An extension of the NJML method to handle protein sequence data andcomputer software implementation

      MOLECULAR BIOLOGY AND EVOLUTION
    65. Lecompte, O; Thompson, JD; Plewniak, F; Thierry, JC; Poch, O
      Multiple alignment of complete sequences (MACS) in the post-genomic era

      GENE
    66. Bujnicki, JM; Rychlewski, L
      Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs

      GENE
    67. Galvao, R; Mendes-Soares, L; Camara, J; Jaco, I; Carmo-Fonseca, M
      Triplet repeats, RNA secondary structure and toxic gain-of-function modelsfor pathogenesis

      BRAIN RESEARCH BULLETIN
    68. Manival, X; Ghisolfi-Nieto, L; Joseph, G; Bouvet, P; Erard, M
      RNA-binding strategies common to cold-shock domain- and RNA recognition motif-containing proteins

      NUCLEIC ACIDS RESEARCH
    69. Yudate, HT; Suwa, M; Irie, R; Matsui, H; Nishikawa, T; Nakamura, Y; Yamaguchi, D; Peng, ZZ; Yamamoto, T; Nagai, K; Hayashi, K; Otsuki, T; Sugiyama, T; Ota, T; Suzuki, Y; Sugano, S; Isogai, T; Masuho, Y
      HUNT: launch of a full-length cDNA database from the Helix Research Institute

      NUCLEIC ACIDS RESEARCH
    70. Adams, MJ; Antoniw, JF; Mullins, JGL
      Plant virus transmission by plasmodiophorid fungi is associated with distinctive transmembrane regions of virus-encoded proteins

      ARCHIVES OF VIROLOGY
    71. Pal, L; Basu, G
      Neural network prediction of 3(10)-helices in proteins

      INDIAN JOURNAL OF BIOCHEMISTRY & BIOPHYSICS
    72. Johansson, J
      Membrane properties and amyloid fibril formation of lung surfactant protein

      BIOCHEMICAL SOCIETY TRANSACTIONS
    73. Washburn, BK; Esposito, RE
      Identification of the Sin3-binding site in Ume6 defines a two-step processfor conversion of Ume6 from a transcriptional repressor to an activator inyeast

      MOLECULAR AND CELLULAR BIOLOGY
    74. Wu, J; Glass, NL
      Identification of specificity determinants and generation of alleles with novel specificity at the het-c heterokaryon incompatibility locus of Neurospora crassa

      MOLECULAR AND CELLULAR BIOLOGY
    75. Jonson, PH; Petersen, SB
      A critical view on conservative mutations

      PROTEIN ENGINEERING
    76. Mandell, JG; Roberts, VA; Pique, ME; Kotlovyi, V; Mitchell, JC; Nelson, E; Tsigelny, I; Ten Eyck, LF
      Protein docking using continuum electrostatics and geometric fit

      PROTEIN ENGINEERING
    77. Novatchkova, M; Eisenhaber, F
      Can molecular mechanisms of biological processes be extracted from expression profiles? Case study: endothelial contribution to tumor-induced angiogenesis

      BIOESSAYS
    78. Boldt, HB; Overgaard, MT; Laursen, LS; Weyer, K; Sottrup-Jensen, L; Oxvig, C
      Mutational analysis of the proteolytic domain of pregnancy-associated plasma protein-A (PAPP-A): classification as a metzincin

      BIOCHEMICAL JOURNAL
    79. Videira, P; Fialho, A; Geremia, RA; Breton, C; Sa-Correia, I
      Biochemical characterization of the beta-1,4-glucuronosyltransferase GelK in the gellan gum-producing strain Sphingomonas paucimobilis ATCC 31461

      BIOCHEMICAL JOURNAL
    80. Rodrigues-Lima, F; Delomenie, C; Goodfellow, GH; Grant, DM; Dupret, JM
      Homology modelling and structural analysis of human arylamine N-acetyltransferase NAT1: evidence for the conservation of a cysteine protease catalytic domain and an active-site loop

      BIOCHEMICAL JOURNAL
    81. Yang, J; Dokurno, P; Tonks, NK; Barford, D
      Crystal structure of the M-fragment of alpha-catenin: implications for modulation of cell adhesion

      EMBO JOURNAL
    82. Cho, SG; Goh, EM; Kim, JK
      Holographic QSAR models for estimating densities of energetic materials

      BULLETIN OF THE KOREAN CHEMICAL SOCIETY
    83. van Eijck, BP; Mooij, WTM; Kroon, J
      Ab initio crystal structure predictions for flexible hydrogen-bonded molecules. Part II. Accurate energy minimization

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    84. van Eijck, BP
      Ab initio crystal structure predictions for flexible hydrogen-bonded molecules. Part III. Effect of lattice vibrations

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    85. Betancourt, MR; Skolnick, J
      Finding the needle in a haystack: Educing native folds from ambiguous ab initio protein structure predictions

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    86. Ferenczy, GG; Angyan, JA
      Intra- and intermolecular interactions in crystals of polar molecules. A study by the mixed quantum mechanical/molecular mechanical SCMP-NDDO method

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    87. Hassinen, T; Perakyla, M
      New energy terms for reduced protein models implemented in an off-lattice force field

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    88. Williams, DE
      Improved intermolecular force field for molecules containing H, C, N, and O atoms, with application to nucleoside and peptide crystals

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    89. Kinjo, AR; Kidera, A; Nakamura, H; Nishikawa, K
      Physicochemical evaluation of protein folds predicted by threading

      EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
    90. Maggio, ET; Ramnarayan, K
      Recent developments in computational proteomics

      TRENDS IN BIOTECHNOLOGY
    91. Simon, I; Fiser, A; Tusnady, GE
      Predicting protein conformation by statistical methods

      BIOCHIMICA ET BIOPHYSICA ACTA-PROTEIN STRUCTURE AND MOLECULAR ENZYMOLOGY
    92. Garduno-Juarez, R; Morales, LB; Flores-Perez, P
      About singularities at the global minimum of empiric force fields for peptides

      JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM
    93. Kolinski, A; Rotkiewicz, P; Skolnick, J
      Structure of proteins: New approach to molecular modeling

      POLISH JOURNAL OF CHEMISTRY
    94. Taylor, R; Macrae, CF
      Rules governing the crystal packing of mono- and dialcohols

      ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE
    95. Jyothi, S; Joshi, RR
      Protein structure determination by non-parametric regression and knowledge-based constraints

      COMPUTERS & CHEMISTRY
    96. Tusnady, GE; Simon, I
      Topology of membrane proteins

      JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES
    97. Alonso, DOV; Daggett, V
      Simulations and computational analyses of prion protein conformations

      ADVANCES IN PROTEIN CHEMISTRY, VOL 57
    98. Fouchecourt, MO; Beliveau, M; Krishnan, K
      Quantitative structure-pharmacokinetic relationship modelling

      SCIENCE OF THE TOTAL ENVIRONMENT
    99. Schon, JC; Jansen, M
      Determination, prediction, and understanding of structures, using the energy landscapes of chemical systems - Part III

      ZEITSCHRIFT FUR KRISTALLOGRAPHIE
    100. Sarrazin, C; Bruckner, M; Herrmann, E; Ruster, B; Bruch, K; Roth, WK; Zeuzem, S
      Quasispecies heterogeneity of the carboxy-terminal part of the E2 gene including the PePHD and sensitivity of hepatitis C virus 1b isolates to antiviral therapy

      VIROLOGY


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Documento generato il 05/08/20 alle ore 10:35:48