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La ricerca find articoli where soggetti phrase all words 'TETRALOOP' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 68 riferimenti
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    1. Greiner-Stoffele, T; Forster, HH; Hofmann, HJ; Hahn, U
      RNase-stable RNA: Conformational parameters of the nucleic acid backbone for binding to RNase T1

      BIOLOGICAL CHEMISTRY
    2. Williams, DJ; Boots, JL; Hall, KB
      Thermodynamics of 2 '-ribose substitutions in UUCG tetraloops

      RNA-A PUBLICATION OF THE RNA SOCIETY
    3. Felden, B; Massire, C; Westhof, E; Atkins, JF; Gesteland, RF
      Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals aspecific structural signature

      NUCLEIC ACIDS RESEARCH
    4. Burkhardt, C; Zacharias, M
      Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation

      NUCLEIC ACIDS RESEARCH
    5. Zagrovic, B; Sorin, EJ; Pande, V
      beta-hairpin folding simulations in atomistic detail using an implicit solvent model

      JOURNAL OF MOLECULAR BIOLOGY
    6. Maguire, JL; Collins, RA
      Effects of cobalt hexammine on folding and self-cleavage of the NeurosporaVS ribozyme

      JOURNAL OF MOLECULAR BIOLOGY
    7. Schneider, C; Brandl, M; Suhnel, J
      Molecular dynamics simulation reveals conformational switching of water-mediated uracil-cytosine base-pairs in an RNA duplex

      JOURNAL OF MOLECULAR BIOLOGY
    8. Treiber, DK; Williamson, JR
      Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction

      JOURNAL OF MOLECULAR BIOLOGY
    9. Ikawa, Y; Nohmi, K; Atsumi, S; Shiraishi, H; Inoue, T
      A comparative study on two GNRA-tetraloop receptors: 11-nt and IC3 motifs

      JOURNAL OF BIOCHEMISTRY
    10. Zacharias, M
      Conformational analysis of DNA-trinucleotide-hairpin-loop structures usinga continuum solvent model

      BIOPHYSICAL JOURNAL
    11. Flynn-Charlebois, A; Lee, N; Suga, H
      A single metal ion plays structural and chemical roles in an aminoacyl-transferase ribozyme

      BIOCHEMISTRY
    12. Qin, H; Sosnick, TR; Pan, T
      Modular construction of a tertiary RNA structure: The specificity domain of the Bacillus subtilis RNase P RNA

      BIOCHEMISTRY
    13. Kushon, SA; Jordan, JP; Seifert, JL; Nielsen, H; Nielsen, PE; Armitage, BA
      Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    14. Hedenstierna, KOF; Siefert, JL; Fox, GE; Murgola, EJ
      Co-conservation of rRNA tetraloop sequences and helix length suggests involvement of the tetraloops in higher-order interactions

      BIOCHIMIE
    15. Gutell, RR; Cannone, JJ; Shang, Z; Du, Y; Serra, MJ
      A story: Unpaired adenosine bases in ribosomal RNAs

      JOURNAL OF MOLECULAR BIOLOGY
    16. Ennifar, E; Nikulin, A; Tishchenko, S; Serganov, A; Nevskaya, N; Garber, M; Ehresmann, B; Ehresmann, C; Nikonov, S; Dumas, P
      The crystal structure of UUCG tetraloop

      JOURNAL OF MOLECULAR BIOLOGY
    17. Gutell, RR; Cannone, JJ; Konings, D; Gautheret, D
      Predicting U-turns in ribosomal RNA with comparative sequence analysis

      JOURNAL OF MOLECULAR BIOLOGY
    18. Kao, R; Davies, J
      Single amino acid substitutions affecting the specificity of the fungal ribotoxin mitogillin

      FEBS LETTERS
    19. Scharpf, M; Sticht, H; Schweimer, K; Boehm, M; Hoffmann, S; Rosch, P
      Antitermination in bacteriophage lambda - The structure of the N36 peptide-boxB RNA complex

      EUROPEAN JOURNAL OF BIOCHEMISTRY
    20. Ikawa, Y; Shiraishi, H; Inoue, T
      A small structural element, Pc-J5/5a, plays dual roles in a group IC1 intron RNA

      BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
    21. Robertson, MEM; Seamons, RA; Belsham, GJ
      A selection system for functional internal ribosome entry site (IRES) elements: Analysis of the requirement for a conserved GNRA tetraloop in the encephalomyocarditis virus IRES

      RNA-A PUBLICATION OF THE RNA SOCIETY
    22. Juneau, K; Cech, TR
      In vitro selection of RNAs with increased tertiary structure stability

      RNA-A PUBLICATION OF THE RNA SOCIETY
    23. Treiber, DK; Williamson, JR
      Exposing the kinetic traps in RNA folding

      CURRENT OPINION IN STRUCTURAL BIOLOGY
    24. Leulliot, N; Baumruk, V; Gouyette, C; Huynh-Dinh, T; Turpin, PY; Ghomi, M
      Aqueous phase structural features of GNRA tetraloops formed in short hairpins as evidenced by UV absorption and Raman spectroscopy

      VIBRATIONAL SPECTROSCOPY
    25. Ikawa, Y; Naito, D; Aono, N; Shiraishi, H; Inoue, T
      A conserved motif in group IC3 introns is a new class of GNRA receptor

      NUCLEIC ACIDS RESEARCH
    26. Costa, M; Michel, F
      Tight binding of the 5 ' exon to domain I of a group II self-splicing intron requires completion of the intron active site

      EMBO JOURNAL
    27. Jaeger, L; Wright, MC; Joyce, GF
      A complex ligase ribozyme evolved in vitro from a group I ribozyme domain

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    28. Ho, YG; Waring, RB
      The maturase encoded by a group I intron from Aspergillus nidulans stabilizes RNA tertiary structure and promotes rapid splicing

      JOURNAL OF MOLECULAR BIOLOGY
    29. Mathews, DH; Sabina, J; Zuker, M; Turner, DH
      Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

      JOURNAL OF MOLECULAR BIOLOGY
    30. Psaridi, L; Georgopoulou, U; Varaklioti, A; Mavromara, P
      Mutational analysis of a conserved tetraloop in the 5 ' untranslated region of hepatitis C virus identifies a novel RNA element essential for the internal ribosome entry site function

      FEBS LETTERS
    31. Pan, BC; Mitra, SN; Sundaralingam, M
      Crystal structure of an RNA 16-mer duplex r(GCAGAGUUAAAUCUGC)(2) with nonadjacent G(syn)center dot A(+)(anti) mispairs

      BIOCHEMISTRY
    32. Silverman, SK; Cech, TR
      Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

      BIOCHEMISTRY
    33. COSTA M; CHRISTIAN EL; MICHEL F
      DIFFERENTIAL CHEMICAL PROBING OF A GROUP-II SELF-SPLICING INTRON IDENTIFIES BASES INVOLVED IN TERTIARY INTERACTIONS AND SUPPORTS AN ALTERNATIVE SECONDARY STRUCTURE MODEL OF DOMAIN-V

      RNA
    34. NAITO Y; SHIRAISHI H; INOUE T
      P5ABC OF THE TETRAHYMENA RIBOZYME CONSISTS OF 3 FUNCTIONALLY INDEPENDENT ELEMENTS

      RNA
    35. ORTOLEVADONNELLY L; SZEWCZAK AA; GUTELL RR; STROBEL SA
      THE CHEMICAL BASIS OF ADENOSINE CONSERVATION THROUGHOUT THE TETRAHYMENA RIBOZYME

      RNA
    36. STROBEL SA; ORTOLEVADONNELLY L; RYDER SP; CATE JH; MONCOEUR E
      COMPLEMENTARY SETS OF NONCANONICAL BASE-PAIRS MEDIATE RNA HELIX PACKING IN THE GROUP INTRON ACTIVE-SITE

      Nature structural biology
    37. CONN GL; DRAPER DE
      RNA STRUCTURE

      Current opinion in structural biology
    38. BARVIK I; GHOMI M
      MOLECULAR-DYNAMICS SIMULATIONS OF NUCLEIC-ACIDS - B) MOLECULAR-DYNAMICS SIMULATIONS OF THE UACG TETRALOOP IN THE VERY SHORT HAIRPIN

      General physiology and biophysics
    39. LEGAULT P; LI J; MOGRIDGE J; KAY LE; GREENBLATT J
      NMR STRUCTURE OF THE BACTERIOPHAGE-LAMBDA N PEPTIDE BOXB RNA COMPLEX - RECOGNITION OF A GNRA FOLD BY AN ARGININE-RICH MOTIF/

      Cell
    40. WESTHOF E; MICHEL F
      RNA STRUCTURE - RIBOZYME ARCHITECTURAL DIVERSITY MADE VISIBLE

      Science
    41. GOLDEN BL; GOODING AR; PODELL ER; CECH TR
      A PREORGANIZED ACTIVE-SITE IN THE CRYSTAL-STRUCTURE OF THE TETRAHYMENA RIBOZYME

      Science
    42. PAPPALARDO L; KERWOOD DJ; PELCZER I; BORER PN
      3-DIMENSIONAL FOLDING OF AN RNA HAIRPIN REQUIRED FOR PACKAGING HIV-1

      Journal of Molecular Biology
    43. MASSIRE C; JAEGER L; WESTHOF E
      DERIVATION OF THE 3-DIMENSIONAL ARCHITECTURE OF BACTERIAL RIBONUCLEASE P-RNAS FROM COMPARATIVE SEQUENCE-ANALYSIS

      Journal of Molecular Biology
    44. FERREDAMARE AR; ZHOU KH; DOUDNA JA
      A GENERAL MODULE FOR RNA CRYSTALLIZATION

      Journal of Molecular Biology
    45. Chanfreau, G; Legrain, P; Jacquier, A
      Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism

      JOURNAL OF MOLECULAR BIOLOGY
    46. TANNER MA; ANDERSON EM; GUTELL RR; CECH TR
      MUTAGENESIS AND COMPARATIVE SEQUENCE-ANALYSIS OF A BASE TRIPLE JOINING THE 2 DOMAINS OF GROUP-I RIBOZYMES

      RNA
    47. BREAKER RR
      DNA ENZYMES

      Nature biotechnology
    48. STALLINGS SC; MOORE PB
      THE STRUCTURE OF AN ESSENTIAL SPLICING ELEMENT - STEM-LOOP IIA FROM YEAST U2 SNRNA

      Structure
    49. DOUDNA JA; CATE JH
      RNA STRUCTURE - CRYSTAL CLEAR

      Current opinion in structural biology
    50. BAUMSTARK T; SCHRODER ARW; RIESNER D
      VIROID PROCESSING - SWITCH FROM CLEAVAGE TO LIGATION IS DRIVEN BY A CHANGE FROM A TETRALOOP TO A LOOP-E CONFORMATION

      EMBO journal
    51. BUTCHER SE; DIECKMANN T; FEIGON J
      SOLUTION STRUCTURE OF A GAAA TETRALOOP RECEPTOR RNA

      EMBO journal
    52. COSTA M; MICHEL F
      RULES FOR RNA RECOGNITION OF GNRA TETRALOOPS DEDUCED BY IN-VITRO SELECTION - COMPARISON WITH IN-VIVO EVOLUTION

      EMBO journal
    53. JESTIN JL; DEME E; JACQUIER A
      IDENTIFICATION OF STRUCTURAL ELEMENTS CRITICAL FOR INTER-DOMAIN INTERACTIONS IN A GROUP-II SELF-SPLICING INTRON

      EMBO journal
    54. GOLDEN BL; PODELL ER; GOODING AR; CECH TR
      CRYSTALS BY DESIGN - A STRATEGY FOR CRYSTALLIZATION OF A RIBOZYME DERIVED FROM THE TETRAHYMENA GROUP-I INTRON

      Journal of Molecular Biology
    55. MILLER JL; KOLLMAN PA
      THEORETICAL-STUDIES OF AN EXCEPTIONALLY STABLE RNA TETRALOOP - OBSERVATION OF CONVERGENCE FROM AN INCORRECT NMR STRUCTURE TO THE CORRECT ONE USING UNRESTRAINED MOLECULAR-DYNAMICS

      Journal of Molecular Biology
    56. BUTCHER SE; DIECKMANN T; FEIGON J
      SOLUTION STRUCTURE OF THE CONSERVED 16S-LIKE RIBOSOMAL-RNA UGAA TETRALOOP

      Journal of Molecular Biology
    57. COSTA M; DEME E; JACQUIER A; MICHEL F
      MULTIPLE TERTIARY INTERACTIONS INVOLVING DOMAIN-II OF GROUP-II SELF-SPLICING INTRONS

      Journal of Molecular Biology
    58. ABRAMOVITZ DL; PYLE AM
      REMARKABLE MORPHOLOGICAL VARIABILITY OF A COMMON RNA FOLDING MOTIF - THE GNRA TETRALOOP-RECEPTOR INTERACTION

      Journal of Molecular Biology
    59. WESTHOF E; MASQUIDA B; JAEGER L
      RNA TECTONICS - TOWARDS RNA DESIGN

      Folding & design
    60. ZWIEB C; MULLER F; LARSEN N
      COMPARATIVE-ANALYSIS OF TERTIARY STRUCTURE ELEMENTS IN SIGNAL RECOGNITION PARTICLE RNA

      Folding & design
    61. DIECKMANN T; SUZUKI E; NAKAMURA GK; FEIGON J
      SOLUTION STRUCTURE OF AN ATP-BINDING RNA APTAMER REVEALS A NOVEL FOLD

      RNA
    62. MICHEL F; WESTHOF E
      VISUALIZING THE LOGIC BEHIND RNA SELF-ASSEMBLY

      Science
    63. GATE JH; GOODING AR; PODELL E; ZHOU KH; GOLDEN BL; SZEWCZAK AA; KUNDROT CE; CECH TR; DOUDNA JA
      RNA TERTIARY STRUCTURE MEDIATION BY ADENOSINE PLATFORMS

      Science
    64. JUCKER FM; HEUS HA; YIP PF; MOORS EHM; PARDI A
      A NETWORK OF HETEROGENEOUS HYDROGEN-BONDS IN GNRA TETRALOOPS

      Journal of Molecular Biology
    65. MARCHANT A; HARTLEY MR
      THE ACTION OF POKEWEED ANTIVIRAL PROTEIN AND RICIN A-CHAIN ON MUTANTSIN THE ALPHA-SARCIN LOOP OF ESCHERICHIA-COLI 23S RIBOSOMAL-RNA

      Journal of Molecular Biology
    66. BEEKWILDER MJ; NIEUWENHUIZEN R; VANDUIN J
      SECONDARY STRUCTURE MODEL FOR THE LAST 2 DOMAINS OF SINGLE-STRANDED RNA PHAGE Q-BETA

      Journal of Molecular Biology
    67. HUTTENHOFER A; NOLLER HF
      FOOTPRINTING MESSENGER-RNA-RIBOSOME COMPLEXES WITH CHEMICAL PROBES

      EMBO journal
    68. JAEGER L; MICHEL F; WESTHOF E
      INVOLVEMENT OF A GNRA TETRALOOP IN LONG-RANGE TERTIARY INTERACTIONS

      Journal of Molecular Biology


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Documento generato il 26/02/20 alle ore 04:58:01