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La ricerca find articoli where soggetti phrase all words 'TETRAHYMENA RIBOZYME' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 320 riferimenti
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    1. MacMillan, AM
      From equilibrium to kinetic footprinting of RNA structure

      JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2
    2. Lindqvist, M; Sandstrom, K; Liepins, V; Stromberg, R; Graslund, A
      Specific metal-ion binding P4-P6 triple-helical domain sites in a model ofthe of a group I intron

      RNA-A PUBLICATION OF THE RNA SOCIETY
    3. Doherty, EA; Doudna, JA
      Ribozyme structures and mechanisms

      ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE
    4. Hampel, KJ; Burke, JM
      Time-resolved hydroxyl-radical footprinting of RNA using Fe(II)-EDTA

      METHODS
    5. Basu, S; Strobel, SA
      Biochemical detection of monovalent metal ion binding sites within RNA

      METHODS
    6. Treiber, DK; Williamson, JR
      Beyond kinetic traps in RNA folding

      CURRENT OPINION IN STRUCTURAL BIOLOGY
    7. Takagi, Y; Warashina, M; Stec, WJ; Yoshinari, K; Taira, K
      Recent advances in the elucidation of the mechanisms of action of ribozymes

      NUCLEIC ACIDS RESEARCH
    8. Brannvall, M; Mikkelsen, NE; Kirsebom, LA
      Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions

      NUCLEIC ACIDS RESEARCH
    9. Zhang, Y; Leibowitz, MJ
      Folding of the group I intron ribozyme from the 26S rRNA gene of Candida albicans

      NUCLEIC ACIDS RESEARCH
    10. Swisher, J; Duarte, DM; Su, LJ; Pyle, AM
      Visualizing the solvent-inaccessible core of a group II intron ribozyme

      EMBO JOURNAL
    11. Atsumi, S; Ikawa, Y; Shiraishi, H; Inoue, T
      Design and development of a catalytic ribonucleoprotein

      EMBO JOURNAL
    12. Hiley, SL; Collins, RA
      Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme

      EMBO JOURNAL
    13. Shih, IH; Been, MD
      Energetic contribution of non-essential 5 ' sequence to catalysis in a hepatitis delta virus ribozyme

      EMBO JOURNAL
    14. Thirumalai, D; Lee, N; Woodson, SA; Klimov, DK
      Early events in RNA folding

      ANNUAL REVIEW OF PHYSICAL CHEMISTRY
    15. Morchio, R; Redaelli, A; Traverse, S
      Proteins, nucleic acids and genetic codes

      RIVISTA DI BIOLOGIA-BIOLOGY FORUM
    16. Webb, AE; Rose, MA; Westhof, E; Weeks, KM
      Protein-dependent transition states for ribonucleoprotein assembly

      JOURNAL OF MOLECULAR BIOLOGY
    17. Geese, WJ; Waring, RB
      A comprehensive characterization of a group IB intron and its encoded maturase reveals that protein-assisted splicing requires an almost intact intron RNA

      JOURNAL OF MOLECULAR BIOLOGY
    18. Caprara, MG; Myers, CA; Lambowitz, AM
      Interaction of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase(CYT-18 protein) with the group I intron P4-P6 domain. Thermodynamic analysis and the role of metal ions

      JOURNAL OF MOLECULAR BIOLOGY
    19. Mohr, G; Rennard, R; Cherniack, AD; Stryker, J; Lambowitz, AM
      Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase inRNA splicing. Role of the idiosyncratic N-terminal extension and differentmodes of interaction with different group I introns

      JOURNAL OF MOLECULAR BIOLOGY
    20. Su, LHJ; Qin, PZ; Michels, WJ; Pyle, AM
      Guiding ribozyme cleavage through motif recognition: The mechanism of cleavage site selection by a group II intron ribozyme

      JOURNAL OF MOLECULAR BIOLOGY
    21. Treiber, DK; Williamson, JR
      Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction

      JOURNAL OF MOLECULAR BIOLOGY
    22. Ikawa, Y; Nohmi, K; Atsumi, S; Shiraishi, H; Inoue, T
      A comparative study on two GNRA-tetraloop receptors: 11-nt and IC3 motifs

      JOURNAL OF BIOCHEMISTRY
    23. Kim, H; Poelling, RR; Leeper, TC; Meyer, MA; Schmidt, FJ
      In vitro transactivation of Bacillus subtilis RNase P RNA

      FEBS LETTERS
    24. Lee, N; Suga, H
      Essential roles of innersphere metal ions for the formation of the glutamine binding site in a bifunctional ribozyme

      BIOCHEMISTRY
    25. Schroeder, SJ; Turner, DH
      Thermodynamic stabilities of internal loops with GU closing pairs in RNA

      BIOCHEMISTRY
    26. Qin, H; Sosnick, TR; Pan, T
      Modular construction of a tertiary RNA structure: The specificity domain of the Bacillus subtilis RNase P RNA

      BIOCHEMISTRY
    27. Disney, MD; Haidaris, CG; Tumer, DH
      Recognition elements for 5 ' exon substrate binding to the Candida albicans group I intron

      BIOCHEMISTRY
    28. Chaulk, SG; MacMillan, AM
      Kinetic footprinting of an RNA-folding pathway using peroxynitrous acid

      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
    29. Woodson, SA
      Recent insights on RNA folding mechanisms from catalytic RNA

      CELLULAR AND MOLECULAR LIFE SCIENCES
    30. Thirumalai, D; Woodson, SA
      Maximizing RNA folding rates: A balancing act

      RNA-A PUBLICATION OF THE RNA SOCIETY
    31. Christian, EL; Kaye, NM; Harris, ME
      Helix P4 is a divalent metal ion binding site in the conserved core of theribonuclease P ribozyme

      RNA-A PUBLICATION OF THE RNA SOCIETY
    32. Masquida, B; Westhof, E
      On the wobble GoU and related pairs

      RNA-A PUBLICATION OF THE RNA SOCIETY
    33. Buchmueller, KL; Webb, AE; Richardson, DA; Weeks, KM
      A collapsed non-native RNA folding state

      NATURE STRUCTURAL BIOLOGY
    34. Russell, R; Millett, IS; Doniach, S; Herschlag, D
      Small angle X-ray scattering reveals a compact intermediate in RNA folding

      NATURE STRUCTURAL BIOLOGY
    35. Ralston, CY; He, Q; Brenowitz, M; Chance, MR
      Stability and cooperativity of individual tertiary contacts in RNA revealed through chemical denaturation

      NATURE STRUCTURAL BIOLOGY
    36. Ikawa, Y; Shiraishi, H; Inoue, T
      Minimal catalytic domain of a group I self-splicing intron RNA

      NATURE STRUCTURAL BIOLOGY
    37. Jaikaran, DCJ; MacMillan, AM
      Template-directed interference footprinting for RNA based on inosine-specific cleavage

      BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
    38. Sardesai, NY; Stagg, SM; VanLoock, MS; Harvey, SC; Schimmel, P
      RNA scaffolds for minihelix-based aminoacyl transfer: Design of "transpeptizymes"

      JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
    39. Vickers, TA; Wyatt, JR; Freier, SM
      Effects of RNA secondary structure on cellular antisense activity

      NUCLEIC ACIDS RESEARCH
    40. Kuo, TC; Herrin, DL
      Quantitative studies of Mn2+-promoted specific and non-specific cleavages of a large RNA: Mn2+-GAAA ribozymes and the evolution of small ribozymes

      NUCLEIC ACIDS RESEARCH
    41. Watanabe, T; Sullenger, BA
      RNA repair: a novel approach to gene therapy

      ADVANCED DRUG DELIVERY REVIEWS
    42. Park, IK; Sung, JS
      K+ and Mg2+ ions promote the self-splicing of the td intron RNA inhibited by spectinomycin

      BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION
    43. Zhou, JM; Nakamatsu, Y; Kuwabara, T; Warashina, M; Tanaka, Y; Yoshinari, K; Taira, K
      Chemical and enzymatic probing of effector-mediated changes in the conformation of a maxizyme

      JOURNAL OF INORGANIC BIOCHEMISTRY
    44. Vortler, LCS; Eckstein, F
      Phosphorothioate modification of RNA for stereochemical and interference analyses

      RNA-LIGAND INTERACTIONS PT A
    45. Moore, MJ; Query, CC
      Joining of RNAs by splinted ligation

      RNA-LIGAND INTERACTIONS PT A
    46. Treiber, DK; Williamson, JR
      Kinetic oligonucleotide hybridization for monitoring kinetic folding of large RNAs

      RNA-LIGAND INTERACTIONS PT A
    47. Doherty, EA; Doudna, JA
      Ribozyme structures and mechanisms

      ANNUAL REVIEW OF BIOCHEMISTRY
    48. Han, MJ; Chang, JY
      Polynucleotide analogues

      BIOPOLYMERS/PVA HYDROGELS/ANIONIC POLYMERISATION NANOCOMPOSITES
    49. Zhuang, XW; Bartley, LE; Babcock, HP; Russell, R; Ha, TJ; Herschlag, D; Chu, S
      A single-molecule study of RNA catalysis and folding

      SCIENCE
    50. Strauss-Soukup, JK; Strobel, SA
      A chemical phylogeny of group I introns based upon interference mapping ofa bacterial ribozyme

      JOURNAL OF MOLECULAR BIOLOGY
    51. Chen, X; Gutell, RR; Lambowitz, AM
      Function of tyrosyl-tRNA synthetase in splicing group I introns: An induced-fit model for binding to the P4-P6 domain based on analysis of mutations at the junction of the P4-P6 stacked helices

      JOURNAL OF MOLECULAR BIOLOGY
    52. Soukup, GA; Emilsson, GAM; Breaker, RR
      Altering molecular recognition of RNA aptamers by allosteric selection

      JOURNAL OF MOLECULAR BIOLOGY
    53. Fedor, MJ
      Structure and function of the hairpin ribozyme

      JOURNAL OF MOLECULAR BIOLOGY
    54. Nix, J; Sussman, D; Wilson, C
      The 1.3 angstrom crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition

      JOURNAL OF MOLECULAR BIOLOGY
    55. Pan, J; Deras, ML; Woodson, SA
      Fast folding of a ribozyme by stabilizing core interactions: Evidence for multiple folding pathways in RNA

      JOURNAL OF MOLECULAR BIOLOGY
    56. Dai, XC; Joyce, GF
      In vitro evolution of a ribozyme that contains 5-bromouridine

      HELVETICA CHIMICA ACTA
    57. Lindqvist, M; Sarkar, M; Winqvist, A; Rozners, E; Stromberg, R; Graslund, A
      Optical spectroscopic study of the effects of a single deoxyribose substitution in a ribose backbone: Implications in RNA-RNA interaction

      BIOCHEMISTRY
    58. Disney, MD; Gryaznov, SM; Turner, DH
      Contributions of individual nucleotides to tertiary binding of substrate by a Pneumocystis carinii group I intron

      BIOCHEMISTRY
    59. Gordon, PM; Sontheimer, EJ; Piccirilli, JA
      Kinetic characterization of the second step of group II intron splicing: Role of metal ions and the cleavage site 2 '-OH in catalysis

      BIOCHEMISTRY
    60. Silverman, SK; Deras, ML; Woodson, SA; Scaringe, SA; Cech, TR
      Multiple folding pathways for the P4-P6 RNA domain

      BIOCHEMISTRY
    61. Disney, MD; Testa, SM; Turner, DH
      Targeting a Pneumocystis carinii group I intron with methylphosphonate oligonucleotides: Backbone charge is not required for binding or reactivity

      BIOCHEMISTRY
    62. Narlikar, GJ; Bartley, LE; Herschlag, D
      Use of duplex rigidity for stability and specificity in RNA tertiary structure

      BIOCHEMISTRY
    63. Ikawa, Y; Shiraishi, H; Inoue, T
      A small structural element, Pc-J5/5a, plays dual roles in a group IC1 intron RNA

      BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
    64. Khan, AU; Ahmad, M; Lal, SK
      Restoration of mRNA splicing by a second-site intragenic suppressor in theT4 ribonucleotide reductase (small subunit) self-splicing intron

      BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
    65. Hamm, ML; Nikolic, D; van Breemen, RB; Piccirilli, JA
      Unconventional origin of metal ion rescue in the hammerhead ribozyme reaction: Mn2+-assisted redox conversion of 2 '-mercaptocytidine to cytidine

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    66. Batey, RT; Rambo, RP; Doudna, JA
      Tertiary motifs in RNA structure and folding

      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
    67. Alberti, S
      Evolution of the genetic code, protein synthesis and nucleic acid replication

      CELLULAR AND MOLECULAR LIFE SCIENCES
    68. Juneau, K; Cech, TR
      In vitro selection of RNAs with increased tertiary structure stability

      RNA-A PUBLICATION OF THE RNA SOCIETY
    69. Russell, R; Herschlag, D
      Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme

      RNA-A PUBLICATION OF THE RNA SOCIETY
    70. Silverman, KS; Zheng, MX; Wu, M; Tinoco, I; Cech, TR
      Quantifying the energetic interplay of RNA tertiary and secondary structure interactions

      RNA-A PUBLICATION OF THE RNA SOCIETY
    71. Strobel, SA; Ortoleva-Donnelly, L
      A hydrogen-bonding triad stabilizes the chemical transition state of a group I ribozyme

      CHEMISTRY & BIOLOGY
    72. Ferre-d'Amare, AR; Doudna, JA
      RNA FOLDS: Insights from recent crystal structures

      ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE
    73. Sontheimer, EJ
      Bridging sulfur substitutions in the analysis of pre-mRNA splicing

      METHODS-A COMPANION TO METHODS IN ENZYMOLOGY
    74. Michael, K; Wang, H; Tor, Y
      Enhanced RNA binding of dimerized aminoglycosides

      BIOORGANIC & MEDICINAL CHEMISTRY
    75. Treiber, DK; Williamson, JR
      Exposing the kinetic traps in RNA folding

      CURRENT OPINION IN STRUCTURAL BIOLOGY
    76. Strobel, SA
      A chemogenetic approach to RNA function/structure analysis

      CURRENT OPINION IN STRUCTURAL BIOLOGY
    77. Beevers, APG; Witch, EM; Jones, BCNM; Cosstick, R; Arnold, JRP; Fisher, J
      Conformational analysis of 3'-S-PO3-linked ribo- and deoxyribodinucleosidemonophosphates

      MAGNETIC RESONANCE IN CHEMISTRY
    78. Ikawa, Y; Naito, D; Aono, N; Shiraishi, H; Inoue, T
      A conserved motif in group IC3 introns is a new class of GNRA receptor

      NUCLEIC ACIDS RESEARCH
    79. Zhang, XJJ; Julin, DA
      Isolation and characterization of the C-terminal nuclease domain from the RecB protein of Escherichia coli

      NUCLEIC ACIDS RESEARCH
    80. Peracchi, A
      Origins of the temperature dependence of hammerhead ribozyme catalysis

      NUCLEIC ACIDS RESEARCH
    81. Brion, P; Michel, F; Schroeder, R; Westhof, E
      Analysis of the cooperative thermal unfolding of the td intron of bacteriophage T4

      NUCLEIC ACIDS RESEARCH
    82. Hollander, V; Kuck, U
      Group II intron splicing in Escherichia coli: phenotypes of cis-acting mutations resemble splicing defects observed in organelle RNA processing

      NUCLEIC ACIDS RESEARCH
    83. Sugimoto, N; Okumoto, Y; Ohmichi, T
      Effect of metal ions and sequence of deoxyribozymes on their RNA cleavage activity

      JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2
    84. Khan, AU; Lal, SK
      Ribozymes: structure and potential applications in medicine

      MEDICAL SCIENCE RESEARCH
    85. Lowe, G
      Oligomeric and biogenetic combinatorial libraries

      NATURAL PRODUCT REPORTS
    86. Clodi, E; Semrad, K; Schroeder, R
      Assaying RNA chaperone activity in vivo using a novel RNA folding trap

      EMBO JOURNAL
    87. James, KD; Ellington, AD
      The fidelity of template-directed oligonucleotide ligation and the inevitability of polymerase function

      ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE
    88. Wank, H; Clodi, E; Wallis, MG; Schroeder, R
      The antibiotic viomycin as a model peptide for the origin of the co-evolution of RNA and proteins

      ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE
    89. Kuo, LY; Davidson, LA; Pico, S
      Characterization of the Azoarcus ribozyme: tight binding to guanosine and substrate by an unusually small group I ribozyme

      BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION
    90. Wilson, DS; Szostak, JW
      In vitro selection of functional nucleic acids

      ANNUAL REVIEW OF BIOCHEMISTRY
    91. Pan, J; Thirumalai, D; Woodson, SA
      Magnesium-dependent folding of self-splicing RNA: Exploring the link between cooperativity, thermodynamics, and kinetics

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    92. Tinoco, I; Bustamante, C
      How RNA folds

      JOURNAL OF MOLECULAR BIOLOGY
    93. Ho, YG; Waring, RB
      The maturase encoded by a group I intron from Aspergillus nidulans stabilizes RNA tertiary structure and promotes rapid splicing

      JOURNAL OF MOLECULAR BIOLOGY
    94. Kieft, JS; Zhou, KH; Jubin, R; Murray, MG; Lau, JYN; Doudna, JA
      The hepatitis C virus internal ribosome entry site adopts an ion-dependenttertiary fold

      JOURNAL OF MOLECULAR BIOLOGY
    95. Qin, PZ; Pyle, AM
      Antagonistic substrate binding by a group II intron ribozyme

      JOURNAL OF MOLECULAR BIOLOGY
    96. Pan, T; Fang, XW; Sosnick, T
      Pathway modulation, circular permutation and rapid RNA folding under kinetic control

      JOURNAL OF MOLECULAR BIOLOGY
    97. Kohler, U; Ayre, BG; Goodman, HM; Haseloff, J
      Trans-splicing ribozymes for targeted gene delivery

      JOURNAL OF MOLECULAR BIOLOGY
    98. Testa, SM; Disney, MD; Turner, DH; Kierzek, R
      Thermodynamics of RNA-RNA duplexes with 2-or 4-thiouridines: Implications for antisense design and targeting a group I intron

      BIOCHEMISTRY
    99. Silverman, SK; Cech, TR
      RNA tertiary folding monitored by fluorescence of covalently attached pyrene

      BIOCHEMISTRY
    100. Fedor, MJ
      Tertiary structure stabilization promotes hairpin ribozyme ligation

      BIOCHEMISTRY


ASDD Area Sistemi Dipartimentali e Documentali, Università di Bologna, Catalogo delle riviste ed altri periodici
Documento generato il 28/02/20 alle ore 20:55:52