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La ricerca find articoli where soggetti phrase all words 'SHAPE COMPLEMENTARITY' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 47 riferimenti
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    1. Vakser, IA; Jiang, SL
      Strategies for modeling the interactions of transmembrane helices of G protein-coupled receptors by geometric complementarity using the GRAMM computer algorithm

      G PROTEIN PATHWAYS, PT A, RECEPTORS
    2. Tremblay, MR; Dickerson, TJ; Janda, KD
      Advances in antibody catalysis of cycloaddition reactions

      ADVANCED SYNTHESIS & CATALYSIS
    3. Pohnert, G
      Diels-Alderases

      CHEMBIOCHEM
    4. Bailey-Kellogg, C; Kelley, JJ; Stein, C; Donald, BR
      Reducing mass degeneracy in SAR by MS by stable isotopic labeling

      JOURNAL OF COMPUTATIONAL BIOLOGY
    5. Norel, R; Sheinerman, F; Petrey, D; Honig, B
      Electrostatic contributions to protein-protein interactions: Fast energetic filters for docking and their physical basis

      PROTEIN SCIENCE
    6. Kohlbacher, O; Burchardt, A; Moll, A; Hildebrandt, A; Bayer, P; Lenhof, HP
      Structure prediction of protein complexes by an NMR-based protein docking algorithm

      JOURNAL OF BIOMOLECULAR NMR
    7. Gardiner, EJ; Willett, P; Artymiuk, PJ
      Protein docking using a genetic algorithm

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    8. Drozdov-Tikhomirov, LN; Linde, DM; Poroikov, VV; Alexandrov, AA; Skurida, GI
      Molecular mechanisms of protein-protein recognition: Whether the surface placed charged residues determine the recognition process?

      JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
    9. Chen, JG; Wang, RX; Taussig, M; Houk, KN
      Quantitative calculations of antibody-antigen binding: Steroid-DB3 bindingenergies by the linear interaction energy method

      JOURNAL OF ORGANIC CHEMISTRY
    10. Decanniere, K; Transue, TR; Desmyter, A; Maes, D; Muyldermans, S; Wyns, L
      Degenerate interfaces in antigen-antibody complexes

      JOURNAL OF MOLECULAR BIOLOGY
    11. Aloy, P; Querol, E; Aviles, FX; Sternberg, MJE
      Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking

      JOURNAL OF MOLECULAR BIOLOGY
    12. Hivert, D
      Enzyme engineering

      CHIMIA
    13. Jain, D; Kaur, KJ; Salunke, DM
      Enhanced binding of a rationally designed peptide ligand of concanavalin Aarises from improved geometrical complementarity

      BIOCHEMISTRY
    14. Sotriffer, CA; Flader, W; Winger, RH; Rode, BM; Liedl, KR; Varga, JM
      Automated docking of ligands to antibodies: Methods and applications

      METHODS-A COMPANION TO METHODS IN ENZYMOLOGY
    15. Katzenelson, O; Avnir, D
      Quantitative chirality/enantioselectivity relations in large random supramolecular structures

      CHEMISTRY-A EUROPEAN JOURNAL
    16. Camacho, CJ; Gatchell, DW; Kimura, SR; Vajda, S
      Scoring docked conformations generated by rigid-body protein-protein docking

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    17. Palma, PN; Krippahl, L; Wampler, JE; Moura, JJG
      BiGGER: A new (soft) docking algorithm for predicting protein interactions

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    18. Ritchie, DW; Kemp, GJL
      Protein docking using spherical polar Fourier correlations

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    19. Li, F; Li, W; Shen, JC
      A novel computational algorithm for determining the structure of protein-phage peptide complexes

      CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE
    20. Gardiner, EJ; Willett, P; Artymiuk, PJ
      Graph-theoretic techniques for macromolecular docking

      JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES
    21. Nussinov, R; Wolfson, HJ
      Efficient computational algorithms for docking and for generating and matching a library of functional epitopes - I. Rigid and flexible hinge-bendingdocking algorithms

      COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING
    22. Preissner, R; Goede, A; Frommel, C
      Homonyms and synonyms in fhe Dictionary of Interfaces in Proteins (DIP)

      BIOINFORMATICS
    23. Jackson, RM
      Comparison of protein-protein interactions in serine protease-inhibitor and antibody-antigen complexes: Implications for the protein docking problem

      PROTEIN SCIENCE
    24. Norel, R; Petrey, D; Wolfson, HJ; Nussinov, R
      Examination of shape complementarity in docking of unbound proteins

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    25. Prabu, MM; Suguna, K; Vijayan, M
      Variability in quaternary association of proteins with the same tertiary fold: A case study and rationalization involving legume lectins

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    26. Zhang, C; Chen, J; DeLisi, C
      Protein-protein recognition: Exploring the energy funnels near the bindingsites

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    27. Ritchie, DW; Kemp, GJL
      Fast computation, rotation, and comparison of low resolution spherical harmonic molecular surfaces

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    28. Trosset, JY; Scheraga, HA
      Flexible docking simulations: Scaled collective variable Monte Carlo minimization approach using Bezier splines, and comparison with a standard MonteCarlo algorithm

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    29. ACKERMANN F; HERRMANN G; POSCH S; SAGERER G
      ESTIMATION AND FILTERING OF POTENTIAL PROTEIN-PROTEIN DOCKING POSITIONS

      BIOINFORMATICS
    30. SCHNECKE V; SWANSON CA; GETZOFF ED; TAINER JA; KUHN LA
      SCREENING A PEPTIDYL DATABASE FOR POTENTIAL LIGANDS TO PROTEINS WITH SIDE-CHAIN FLEXIBILITY

      Proteins
    31. CAI WS; ZHANG MS; MAIGRET B
      NEW APPROACH FOR REPRESENTATION OF MOLECULAR-SURFACE

      Journal of computational chemistry
    32. TROSSET JY; SCHERAGA HA
      REACHING THE GLOBAL MINIMUM IN DOCKING SIMULATIONS - A MONTE-CARLO ENERGY MINIMIZATION APPROACH USING BEZIER SPLINES

      Proceedings of the National Academy of Sciences of the United Statesof America
    33. EXNER TE; BRICKMANN J
      NEW DOCKING ALGORITHM-BASED ON FUZZY SET-THEORY

      JOURNAL OF MOLECULAR MODELING
    34. DASGUPTA S; IYER GH; BRYANT SH; LAWRENCE CE; BELL JA
      EXTENT AND NATURE OF CONTACTS BETWEEN PROTEIN MOLECULES IN CRYSTAL LATTICES AND BETWEEN SUBUNITS OF PROTEIN OLIGOMERS

      Proteins
    35. XU D; TSAI CJ; NUSSINOV R
      HYDROGEN-BONDS AND SALT BRIDGES ACROSS PROTEIN-PROTEIN INTERFACES

      Protein engineering
    36. JONES S; THORNTON JM
      PREDICTION OF PROTEIN-PROTEIN INTERACTION SITES USING PATCH ANALYSIS

      Journal of Molecular Biology
    37. WALLQVIST A; COVELL DG
      DOCKING ENZYME-INHIBITOR COMPLEXES USING A PREFERENCE-BASED FREE-ENERGY SURFACE

      Proteins
    38. LIN SL; NUSSINOV R
      MOLECULAR RECOGNITION VIA FACE CENTER REPRESENTATION OF A MOLECULAR-SURFACE

      Journal of molecular graphics
    39. JONES S; THORNTON JM
      PRINCIPLES OF PROTEIN-PROTEIN INTERACTIONS

      Proceedings of the National Academy of Sciences of the United Statesof America
    40. LASKOWSKI RA; THORNTON JM; HUMBLET C; SINGH J
      X-SITE - USE OF EMPIRICALLY DERIVED ATOMIC PACKING PREFERENCES TO IDENTIFY FAVORABLE INTERACTION REGIONS IN THE BINDING-SITES OF PROTEINS

      Journal of Molecular Biology
    41. VAKSER IA
      LOW-RESOLUTION DOCKING - PREDICTION OF COMPLEXES FOR UNDERDETERMINED STRUCTURES

      Biopolymers
    42. HUBBARD SJ; ARGOS P
      CAVITIES AND PACKING AT PROTEIN INTERFACES

      Protein science
    43. VAKSER IA; AFLALO C
      HYDROPHOBIC DOCKING - A PROPOSED ENHANCEMENT TO MOLECULAR RECOGNITIONTECHNIQUES

      Proteins
    44. HELMERCITTERICH M; TRAMONTANO A
      PUZZLE - A NEW METHOD FOR AUTOMATED PROTEIN DOCKING BASED ON SURFACE SHAPE COMPLEMENTARITY

      Journal of Molecular Biology
    45. HUML K; REMKO M
      COMPUTER MODELING OF INTERACTIONS BETWEEN SMALL MOLECULES AND MACROMOLECULES

      Chemicke listy
    46. SHOICHET BK; KUNTZ ID
      MATCHING CHEMISTRY AND SHAPE IN MOLECULAR DOCKING

      Protein engineering
    47. LAWRENCE MC; COLMAN PM
      SHAPE COMPLEMENTARITY AT PROTEIN-PROTEIN INTERFACES

      Journal of Molecular Biology


ASDD Area Sistemi Dipartimentali e Documentali, Università di Bologna, Catalogo delle riviste ed altri periodici
Documento generato il 29/05/20 alle ore 16:12:11