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La ricerca find articoli where soggetti phrase all words 'SEQUENCE ALIGNMENTS' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 101 riferimenti
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    1. Afonnikov, DA; Oshchepkov, DY; Kolchanov, NA
      Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions

      BIOINFORMATICS
    2. Biagini, A; Puigserver, A
      Sequence analysis of the aminoacylase-1 family. A new proposed signature for metalloexopeptidases

      COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY
    3. Eisenberg, I; Avidan, N; Potikha, T; Hochner, H; Chen, M; Olender, T; Barash, M; Shemesh, M; Sadeh, M; Grabov-Nardini, G; Shmilevich, I; Friedmann, A; Karpati, G; Bradley, WG; Baumbach, L; Lancet, D; Ben Asher, E; Beckmann, JS; Argov, Z; Mitrani-Rosenbaum, S
      The UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase gene ismutated in recessive hereditary inclusion body myopathy

      NATURE GENETICS
    4. Subbotin, SA; Vierstraete, A; De Ley, P; Rowe, J; Waeyenberge, L; Moens, M; Vanfleteren, JR
      Phylogenetic relationships within the cyst-forming nematodes (Nematoda, Heteroderidae) based on analysis of sequences from the ITS regions of ribosomal DNA

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    5. Orengo, CA; Sillitoe, I; Reeves, G; Pearl, FMG
      Review: What can structural classifications reveal about protein evolution?

      JOURNAL OF STRUCTURAL BIOLOGY
    6. Rost, B
      Review: Protein secondary structure prediction continues to rise

      JOURNAL OF STRUCTURAL BIOLOGY
    7. Bienstock, RJ; Barrett, JC
      KAI1, a prostate metastasis' suppressor: Prediction of solvated structure and interactions with binding partners; Integrins, cadherins, and cell-surface receptor proteins

      MOLECULAR CARCINOGENESIS
    8. Shah, PK; Buslje, CM; Sowdhamini, R
      Structural determinants of binding and specificity in transforming growth factor-receptor interactions

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    9. Tieleman, DP; Shrivastava, IH; Ulmschneider, MR; Sansom, MSP
      Proline-induced hinges in transmembrane helices: Possible roles in ion channel gating

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    10. Hardison, RC; Chui, DHK; Riemer, C; Giardine, B; Lehvaslaiho, H; Wajcman, H; Miller, W
      Databases of human hemoglobin variants and other resources at the globin gene server

      HEMOGLOBIN
    11. Jonson, PH; Petersen, SB
      A critical view on conservative mutations

      PROTEIN ENGINEERING
    12. Dickinson, AM; Cavet, J; Cullup, H; Wang, XN; Sviland, L; Middleton, PG
      GvHD risk assessment in hematopoietic stem cell transplantation: Role of cytokine gene polymorphisms and an in vitro human skin explant model

      HUMAN IMMUNOLOGY
    13. Ranatunga, KM; Law, RJ; Smith, GR; Sansom, MSP
      Electrostatics studies and molecular dynamics simulations of a homology model of the Shaker K+ channel pore

      EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
    14. Schut, GJ; Menon, AL; Adams, MWW
      2-keto acid oxidoreductases from Pyrococcus furiosus and Thermococcus litoralis

      HYPERTHERMOPHILIC ENZYMES, PT B
    15. Tambur, AR; Ortegel, JW; Ben-Ari, Z; Shabtai, E; Klein, T; Michowiz, R; Tur-Kaspa, R; Mor, E
      Role of cytokine gene polymorphism in hepatitis C recurrence and allograftrejection among liver transplant recipients

      TRANSPLANTATION
    16. Schappach, A; Holtje, HD
      Molecular modelling of 17 alpha-hydroxylase-17,20-lyase

      PHARMAZIE
    17. Shiu, SH; Bleecker, AB
      Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    18. Capitani, G; Rossmann, R; Sargent, DF; Grutter, MG; Richmond, TJ; Hennecke, H
      Structure of the soluble domain of a membrane-anchored thioredoxin-like protein from Bradyrhizobium japonicum reveals unusual properties

      JOURNAL OF MOLECULAR BIOLOGY
    19. Hua, SJ; Sun, ZR
      A novel method of protein secondary structure prediction with high segmentoverlap measure: Support vector machine approach

      JOURNAL OF MOLECULAR BIOLOGY
    20. Mandel-Gutfreund, Y; Zaremba, SM; Gregoret, LM
      Contributions of residue pairing to beta-sheet formation: Conservation andcovariation of amino acid residue pairs on antiparallel beta-strands

      JOURNAL OF MOLECULAR BIOLOGY
    21. Peelman, F; Vanloo, B; Verschelde, JL; Labeur, C; Caster, H; Taveirne, J; Verhee, A; Duverger, N; Vandekerckhove, J; Tavernier, J; Rosseneu, M
      Effect of mutations of N- and C-terminal charged residues on the activity of LCAT

      JOURNAL OF LIPID RESEARCH
    22. Desrumaux, C; Labeur, C; Verhee, A; Tavernier, J; Vandekerckhove, J; Rosseneu, M; Peelman, F
      A hydrophobic cluster at the surface of the human plasma phospholipid transfer protein is critical for activity on high density lipoproteins

      JOURNAL OF BIOLOGICAL CHEMISTRY
    23. Bond, CS; White, MF; Hunter, WN
      High resolution structure of the phosphohistidine-activated form of Escherichia coli cofactor-dependent phosphoglycerate mutase

      JOURNAL OF BIOLOGICAL CHEMISTRY
    24. Ulmschneider, MB; Sansom, MSP
      Amino acid distributions in integral membrane protein structures

      BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
    25. Ng, PC; Henikoff, JG; Henikoff, S
      PHAT: a transmembrane-specific substitution matrix

      BIOINFORMATICS
    26. Schmidler, SC; Liu, JS; Brutlag, DL
      Bayesian segmentation of protein secondary structure

      JOURNAL OF COMPUTATIONAL BIOLOGY
    27. Bailly, JE; McAuliffe, JM; Skiadopoulos, MH; Collins, PL; Murphy, BR
      Sequence determination and molecular analysis of two strains of bovine parainfluenza virus type 3 that are attenuated for primates

      VIRUS GENES
    28. Aloy, P; Mas, JM; Marti-Renom, MA; Querol, E; Aviles, FX; Oliva, B
      Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidaseA2

      JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
    29. Kashiwabara, S; Azuma, S; Tsuduki, M; Suzuki, Y
      The primary structure of the subunit in Bacillus thermoamyloliquefaciens KP1071 molecular weight 540,000 homohexameric alpha-glucosidase II belongingto the glycosyl hydrolase family 31

      BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
    30. Wright-Minogue, J; Yao, NH; Zhang, RM; Butkiewicz, NJ; Baroudy, BM; Lau, JYN; Hong, Z
      Cross-genotypic interaction between hepatitis C virus NS3 protease domainsand NS4A cofactors

      JOURNAL OF HEPATOLOGY
    31. Heger, A; Holm, L
      Towards a covering set of protein family profiles

      PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
    32. Morgan, K; Stevens, EB; Shah, B; Cox, PJ; Dixon, AK; Lee, K; Pinnock, RD; Hughes, J; Richardson, PJ; Mizuguchi, K; Jackson, AP
      beta 3: An additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    33. Capitani, G; Markovic-Housley, Z; DelVal, G; Morris, M; Jansonius, JN; Schurmann, P
      Crystal structures of two functionally different thioredoxins in spinach chloroplasts

      JOURNAL OF MOLECULAR BIOLOGY
    34. Subramanian, G; Koonin, EV; Aravind, L
      Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum

      INFECTION AND IMMUNITY
    35. Chevalier, N; Rigden, DJ; Van Roy, J; Opperdoes, FR; Michels, PAM
      Trypanosoma brucei contains a 2,3-bisphosphoglycerate independent phosphoglycerate mutase

      EUROPEAN JOURNAL OF BIOCHEMISTRY
    36. Capener, CE; Shrivastava, IH; Ranatunga, KM; Forrest, LR; Smith, GR; Sansom, MSP
      Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel

      BIOPHYSICAL JOURNAL
    37. Shrivastava, IH; Capener, CE; Forrest, LR; Sansom, MSP
      Structure and dynamics of K channel pore-lining helices: A comparative simulation study

      BIOPHYSICAL JOURNAL
    38. Robinson, J; Malik, A; Parham, P; Bodmer, JG; Marsh, SGE
      IMGT/HLA Database - a sequence database for the human major histocompatibility complex

      TISSUE ANTIGENS
    39. Debe, DA; Carlson, MJ; Sadanobu, J; Chan, SI; Goddard, WA
      Protein fold determination from sparse distance restraints: The RestrainedGeneric Protein Direct Monte Carlo method

      JOURNAL OF PHYSICAL CHEMISTRY B
    40. Baldi, P; Brunak, S; Frasconi, P; Soda, G; Pollastri, G
      Exploiting the past and the future in protein secondary structure prediction

      BIOINFORMATICS
    41. Rittinger, K; Budman, J; Xu, JA; Volinia, S; Cantley, LC; Smerdon, SJ; Gamblin, SJ; Yaffe, MB
      Structural analysis of 14-3-3 phosphopeptide complexes identifies a dual role for the nuclear export signal of 14-3-3 in ligand binding

      MOLECULAR CELL
    42. Giribet, G; Wheeler, WC
      On gaps

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    43. Arias, CA; Martin-Martinez, M; Blundell, TL; Arthur, M; Courvalin, P; Reynolds, PE
      Characterization and modelling of VanT: a novel, membrane-bound, serine racemase from vancomycin-resistant Enterococcus gallinarum BM4174

      MOLECULAR MICROBIOLOGY
    44. Kashiwabara, S; Ogawa, S; Miyoshi, N; Oda, M; Suzuki, Y
      Three domains comprised in thermostable molecular weight 54,000 pullulanase of type I from Bacillus flavocaldarius KP1228

      BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
    45. Rigden, DJ; Carneiro, M
      A structural model for the rolA protein and its interaction with DNA

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    46. Ortiz, AR; Kolinski, A; Rotkiewicz, P; Ilkowski, B; Skolnick, J
      Ab initio folding of proteins using restraints derived from evolutionary information

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    47. Gromiha, MM
      A simple method for predicting transmembrane alpha helices with better accuracy

      PROTEIN ENGINEERING
    48. Fariselli, P; Casadio, R
      A neural network based predictor of residue contacts in proteins

      PROTEIN ENGINEERING
    49. Gulbis, JM; Mann, S; MacKinnon, R
      Structure of a voltage-dependent K+ channel beta subunit

      CELL
    50. Bezerra, IC; Resende, RD; Pozzer, L; Nagata, T; Kormelink, R; De Avila, AC
      Increase of tospoviral diversity in Brazil with the identification of two new tospovirus species, one from chrysanthemum and one from zucchini

      PHYTOPATHOLOGY
    51. Capitani, G; Hohenester, E; Feng, L; Storici, P; Kirsch, JF; Jansonius, JN
      Structure of 1-aminocyclopropane-1-carboxylate synthase, a key enzyme in the biosynthesis of the plant hormone ethylene

      JOURNAL OF MOLECULAR BIOLOGY
    52. Mirny, LA; Shakhnovich, EI
      Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function

      JOURNAL OF MOLECULAR BIOLOGY
    53. Hadfield, A; Kryger, G; Ouyang, J; Petsko, GA; Ringe, D; Viola, R
      Structure of aspartate-beta-semialdehyde dehydrogenase from Escherichia coli, a key enzyme in the aspartate family of amino acid biosynthesis

      JOURNAL OF MOLECULAR BIOLOGY
    54. Peelman, F; Verschelde, JL; Vanloo, B; Ampe, C; Labeur, C; Tavernier, J; Vandekerckhove, J; Rosseneu, M
      Effects of natural mutations in lecithin : cholesterol acyltransferase on the enzyme structure and activity

      JOURNAL OF LIPID RESEARCH
    55. Cronin, NB; Wallace, BA
      Do the structures of big ET-1 and big ET-3 adopt a similar overall fold? Consequences for endothelin converting enzyme specificity

      BIOCHEMISTRY
    56. Gruber, K; Zhou, B; Houk, KN; Lerner, RA; Shevlin, CG; Wilson, IA
      Structural basis for antibody catalysis of a disfavored ring closure reaction

      BIOCHEMISTRY
    57. Sutcliffe, MJ; Smeeton, AH; Wo, ZG; Oswald, RE
      Three-dimensional models of glutamate receptors

      Faraday discussions
    58. PADILLAZUNIGA AJ; ROJODOMINGUEZ A
      NON-HOMOLOGY KNOWLEDGE-BASED PREDICTION OF THE PAPAIN PROSEGMENT FOLDING PATTERN - A DESCRIPTION OF PLAUSIBLE FOLDING AND ACTIVATION MECHANISMS

      Folding & design
    59. Gracy, J; Argos, P
      DOMO: a new database of aligned protein domains

      TRENDS IN BIOCHEMICAL SCIENCES
    60. FROGER A; TALLUR B; THOMAS D; DELAMARCHE C
      PREDICTION OF FUNCTIONAL RESIDUES IN WATER CHANNELS AND RELATED PROTEINS

      Protein science
    61. GARCIAVALLVE S; PALAU J
      NUCLEAR RECEPTORS, NUCLEAR-RECEPTOR FACTORS, AND NUCLEAR-RECEPTOR-LIKE ORPHANS FORM A LARGE PARALOG CLUSTER IN HOMO-SAPIENS

      Molecular biology and evolution
    62. JONES DT; TAYLOR WR
      TOWARDS STRUCTURAL GENOMICS FOR TRANSMEMBRANE PROTEINS

      Biochemical Society transactions
    63. SUTCLIFFE MJ; SMEETON AH; WO ZG; OSWALD RE
      3-DIMENSIONAL MODELS OF GLUTAMATE RECEPTORS

      Biochemical Society transactions
    64. SANSOM MSP; KERR ID; LAW R; DAVISON L; TIELEMAN DP
      MODELING THE PACKING OF TRANSMEMBRANE HELICES - APPLICATION TO AQUAPORIN-1

      Biochemical Society transactions
    65. JERUZALMI D; STEITZ TA
      STRUCTURE OF T7 RNA-POLYMERASE COMPLEXED TO THE TRANSCRIPTIONAL INHIBITOR T7 LYSOZYME

      EMBO journal (Print)
    66. Gerstein, M; Hegyi, H
      Comparing genomes in terms of protein structure: surveys of a finite partslist

      FEMS MICROBIOLOGY REVIEWS
    67. OLSZEWSKI KA
      AB-INITIO PROTEIN-FOLDING - IS CONFORMATIONAL SPACE SEARCHING ENOUGH

      Polish Journal of Chemistry
    68. NAGAR B; JONES RG; DIEFENBACH RJ; ISENMAN DE; RINI JM
      X-RAY CRYSTAL-STRUCTURE OF C3D - A C3 FRAGMENT AND LIGAND FOR COMPLEMENT RECEPTOR-2

      Science
    69. STUART JK; MYSZKA DG; JOSS L; MITCHELL RS; MCDONALD SM; XIE ZH; TAKAYAMA S; REED JC; ELY KR
      CHARACTERIZATION OF INTERACTIONS BETWEEN THE ANTI-APOPTOTIC PROTEIN BAG-1 AND HSC70 MOLECULAR CHAPERONES

      The Journal of biological chemistry
    70. BUNCE M; BARNARDO MCNM; WELSH KI
      THE PCR-SSP MANAGER COMPUTER-PROGRAM - A TOOL FOR MAINTAINING SEQUENCE ALIGNMENTS AND AUTOMATICALLY UPDATING THE SPECIFICITIES OF PCR-SSP PRIMERS AND PRIMER MIXES

      Tissue antigens
    71. ASZODI A; MUNRO REJ; TAYLOR WR
      DISTANCE GEOMETRY BASED COMPARATIVE MODELING

      Folding & design
    72. THOMPSON MJ; GOLDSTEIN RA
      PREDICTING PROTEIN SECONDARY STRUCTURE WITH PROBABILISTIC SCHEMATA OFEVOLUTIONARILY DERIVED INFORMATION

      Protein science
    73. OSUNA J; SOBERON X; MORETT E
      A PROPOSED ARCHITECTURE FOR THE CENTRAL DOMAIN OF THE BACTERIAL ENHANCER-BINDING PROTEINS BASED ON SECONDARY STRUCTURE PREDICTION AND FOLD RECOGNITION

      Protein science
    74. SHEARMAN LP; ZYLKA MJ; WEAVER DR; KOLAKOWSKI LF; REPPERT SM
      2 PERIOD HOMOLOGS - CIRCADIAN EXPRESSION AND PHOTIC REGULATION IN THESUPRACHIASMATIC NUCLEI

      Neuron
    75. ARST HN; HOLDEN DW; CADDICK MX
      EVOLUTION OF TRANSCRIPTION-REGULATING PROTEINS - CAVEAT LECTOR

      Gene
    76. TURMEL M; OTIS C; COTE V; LEMIEUX C
      EVOLUTIONARILY CONSERVED AND FUNCTIONALLY IMPORTANT RESIDUES IN THE I-CEUI HOMING ENDONUCLEASE

      Nucleic acids research
    77. PERSSON B; ARGOS P
      PREDICTION OF MEMBRANE-PROTEIN TOPOLOGY UTILIZING MULTIPLE SEQUENCE ALIGNMENTS

      Journal of protein chemistry
    78. TAYLOR WR
      RESIDUAL COLORS - A PROPOSAL FOR AMINOCHROMOGRAPHY

      Protein engineering
    79. LUND O; FRIMAND K; GORODKIN J; BOHR H; BOHR J; HANSEN J; BRUNAK S
      PROTEIN DISTANCE CONSTRAINTS PREDICTED BY NEURAL NETWORKS AND PROBABILITY DENSITY-FUNCTIONS

      Protein engineering
    80. ROST B; ODONOGHUE S
      SISYPHUS AND PREDICTION OF PROTEIN-STRUCTURE

      Computer applications in the biosciences
    81. SANCHEZ R; SALI A
      COMPARATIVE PROTEIN-STRUCTURE MODELING AS AN OPTIMIZATION PROBLEM

      Journal of molecular structure. Theochem
    82. PAZOS F; HELMERCITTERICH M; AUSIELLO G; VALENCIA A
      CORRELATED MUTATIONS CONTAIN INFORMATION ABOUT PROTEIN-PROTEIN INTERACTION

      Journal of Molecular Biology
    83. MELO F; FEYTMANS E
      NOVEL KNOWLEDGE-BASED MEAN FORCE POTENTIAL AT ATOMIC-LEVEL

      Journal of Molecular Biology
    84. SAKANARI JA; NADLER SA; CHAN VJ; ENGEL JC; LEPTAK C; BOUVIER J
      LEISHMANIA-MAJOR - COMPARISON OF THE CATHEPSIN-L-LIKE AND CATHEPSIN-B-LIKE CYSTEINE PROTEASE GENES WITH THOSE OF OTHER TRYPANOSOMATIDS

      Experimental parasitology
    85. ASZODI A; TAYLOR WR
      HOMOLOGY MODELING BY DISTANCE GEOMETRY

      Folding & design
    86. ROST B; FARISELLI P; CASADIO R
      TOPOLOGY PREDICTION FOR HELICAL TRANSMEMBRANE PROTEINS AT 86-PERCENT ACCURACY

      Protein science
    87. DIFRANCESCO V; GARNIER J; MUNSON PJ
      IMPROVING PROTEIN SECONDARY STRUCTURE PREDICTION WITH ALIGNED HOMOLOGOUS SEQUENCES

      Protein science
    88. THOMAS DJ; CASARI G; SANDER C
      THE PREDICTION OF PROTEIN CONTACTS FROM MULTIPLE SEQUENCE ALIGNMENTS

      Protein engineering
    89. DAS AK; HELPS NR; COHEN PTW; BARFORD D
      CRYSTAL-STRUCTURE OF THE PROTEIN SERINE THREONINE PHOSPHATASE 2C AT 2.0-ANGSTROM RESOLUTION/

      EMBO journal
    90. HWA T; LASSIG M
      SIMILARITY DETECTION AND LOCALIZATION

      Physical review letters
    91. DEFAY TR; COHEN FE
      MULTIPLE SEQUENCE INFORMATION FOR THREADING ALGORITHMS

      Journal of Molecular Biology
    92. FISER A; SIMON I; BARTON GJ
      CONSERVATION OF AMINO-ACIDS IN MULTIPLE ALIGNMENTS - ASPARTIC-ACID HAS UNEXPECTED CONSERVATION

      FEBS letters
    93. NIERMANN T; KIRSCHNER K
      THE PREDICTED SECONDARY STRUCTURE OF THE G-TYPE GLUTAMINE AMIDOTRANSFERASE IS COMPATIBLE WITH TIM-BARREL TOPOLOGY

      Protein engineering
    94. REMOND M; SHELDRICK P; LEBRETON F; FOULON T
      SEQUENCE OF THE CANINE HERPESVIRUS THYMIDINE KINASE GENE - TAXON-PREFERRED AMINO-ACID-RESIDUES IN THE ALPHAHERPESVIRAL THYMIDINE KINASES

      Virus research
    95. HAN KF; BAKER D
      RECURRING LOCAL SEQUENCE MOTIFS IN PROTEINS

      Journal of Molecular Biology
    96. BALDI P; CHAUVIN Y; HUNKAPILLER T; MCCLURE MA
      HIDDEN MARKOV-MODELS OF BIOLOGICAL PRIMARY SEQUENCE INFORMATION

      Proceedings of the National Academy of Sciences of the United Statesof America
    97. FAGAN MJ; SAIER MH
      P-TYPE ATPASES OF EUKARYOTES AND BACTERIA - SEQUENCE ANALYSES AND CONSTRUCTION OF PHYLOGENETIC TREES

      Journal of molecular evolution
    98. KROGH A; BROWN M; MIAN IS; SJOLANDER K; HAUSSLER D
      HIDDEN MARKOV-MODELS IN COMPUTATIONAL BIOLOGY - APPLICATIONS TO PROTEIN MODELING

      Journal of Molecular Biology
    99. HERINGA J; ARGOS P
      A METHOD TO RECOGNIZE DISTANT REPEATS IN PROTEIN SEQUENCES

      Proteins
    100. JOHNSON MS; OVERINGTON JP
      A STRUCTURAL BASIS FOR SEQUENCE COMPARISONS - AN EVALUATION OF SCORING METHODOLOGIES

      Journal of Molecular Biology


ASDD Area Sistemi Dipartimentali e Documentali, Università di Bologna, Catalogo delle riviste ed altri periodici
Documento generato il 07/08/20 alle ore 11:59:44