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La ricerca find articoli where soggetti phrase all words 'RNA SECONDARY STRUCTURE' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 291 riferimenti
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    1. Far, RKK; Nedbal, W; Sczakiel, G
      Concepts to automate the theoretical design of effective antisense oligonucleotides

      BIOINFORMATICS
    2. Franchina, M; Hooper, J; Kay, PH
      Five novel alternatively spliced transcripts of DNA (cytosine-5) methyltransferase 2 in human peripheral blood leukocytes

      INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
    3. Anthonisen, IL; Salvador, ML; Klein, U
      Specific sequence elements in the 5 ' untranslated regions of rbcL and atpB gene mRNAs stabilize transcripts in the chloroplast of Chlamydomonas reinhardtii

      RNA-A PUBLICATION OF THE RNA SOCIETY
    4. Svitkin, YV; Pause, A; Haghighat, A; Pyronnet, S; Witherell, G; Belsham, GJ; Sonenberg, N
      The requirement for eukaryotic initiation factor 4A (eIF4A) in translationis in direct proportion to the degree of mRNA 5 ' secondary structure

      RNA-A PUBLICATION OF THE RNA SOCIETY
    5. Flamm, C; Hofacker, IL; Maurer-Stroh, S; Stadler, PF; Zehl, M
      Design of multistable RNA molecules

      RNA-A PUBLICATION OF THE RNA SOCIETY
    6. Olsthoorn, RCL; Bol, JF
      Sequence comparison and secondary structure analysis of the 3 ' noncoding region of flavivirus genomes reveals multiple pseudoknots

      RNA-A PUBLICATION OF THE RNA SOCIETY
    7. Chilton, NB; Newton, LA; Beveridge, I; Gasser, RB
      Evolutionary relationships of trichostrongyloid nematodes (strongylida) inferred from ribosomal DNA sequence data

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    8. Mayol, M; Rossello, JA
      Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    9. Nirmala, X; Hypsa, V; Zurovec, M
      Molecular phylogeny of Calyptratae (Diptera : Brachycera): the evolution of 18S and 16S ribosomal rDNAs in higher dipterans and their use in phylogenetic inference

      INSECT MOLECULAR BIOLOGY
    10. Moser, C; Bosshart, A; Tratschin, JD; Hofmann, MA
      A recombinant classical swine fever virus with a marker insertion in the internal ribosome entry site

      VIRUS GENES
    11. Oruetxebarria, I; Valkonen, JPT
      Analysis of the P1 gene sequences and the 3 '-terminal sequences and secondary structures of the single-stranded RNA genome of Potato virus v

      VIRUS GENES
    12. Tan, C; Chang, L; Shen, S; Liu, DX; Kwang, J
      Comparison of the 5 ' leader sequences of North American isolates of reference and field strains of porcine reproductive and respiratory syndrome virus (PRRSV)

      VIRUS GENES
    13. Tam, W
      Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA

      GENE
    14. Jones, RB; Carstens, RP; Luo, YD; McKeehan, WL
      5 '- and 3 '-terminal nucleotides in the FGFR2 ISAR splicing element core have overlapping roles in exon IIIb activation and exon IIIc repression

      NUCLEIC ACIDS RESEARCH
    15. Wang, TH; Ward, M; Grabowski, P; Secombes, CJ
      Molecular cloning, gene organization and expression of rainbow trout (Oncorhynchus mykiss) inducible nitric oxide synthase (iNOS) gene

      BIOCHEMICAL JOURNAL
    16. Boni, IV; Artamonova, VS; Tzareva, NV; Dreyfus, M
      Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1

      EMBO JOURNAL
    17. Caetano-Anolles, G
      Novel strategies to study the role of mutation and nucleic acid structure in evolution

      PLANT CELL TISSUE AND ORGAN CULTURE
    18. Yanofsky, C
      Advancing our knowledge in biochemistry, genetics, and microbiology through studies on tryptophan metabolism

      ANNUAL REVIEW OF BIOCHEMISTRY
    19. Rowe, A; Burlison, J; Macadam, AJ; Minor, RD
      Functional formation of domain V of the poliovirus noncoding region: Significance of unpaired bases

      VIROLOGY
    20. Shurtleff, AC; Beasley, DWC; Chen, JJY; Ni, HL; Suderman, MT; Wang, HM; Xu, RL; Wang, E; Weaver, SC; Watts, DM; Russell, KL; Barrett, ADT
      Genetic variation in the 3 ' non-coding region of dengue viruses

      VIROLOGY
    21. Montanari, A; Mezard, M
      Hairpin formation and elongation of biomolecules

      PHYSICAL REVIEW LETTERS
    22. Stover, NA; Steele, RE
      Trans-spliced leader addition to mRNAs in a cnidarian

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    23. Ducza, E; Gaspar, R; Marki, A; Gyula, P; Bottka, S; Falkay, G
      Use of antisense oligonucleotides to verify the role of the alpha(1A)-adrenergic receptor in the contractility of the rat uterus post partum

      MOLECULAR PHARMACOLOGY
    24. Myers, TM; Kolupaeva, VG; Mendez, E; Baginski, SG; Frolov, I; Hellen, CUT; Rice, CM
      Efficient translation initiation is required for replication of bovine viral diarrhea virus subgenomic replicons

      JOURNAL OF VIROLOGY
    25. Duque, H; Palmenberg, AC
      Phenotypic characterization of three phylogenetically conserved stem-loop motifs in the mengovirus 3 ' untranslated region

      JOURNAL OF VIROLOGY
    26. Le, SY; Liu, WM; Chen, JH; Maizel, JV
      Local thermodynamic stability scores are well represented by a non-centralstudent's t distribution

      JOURNAL OF THEORETICAL BIOLOGY
    27. Garlapati, S; Chou, J; Wang, CC
      Specific secondary structures in the capsid-coding region of giardiavirus transcript are required for its translation in Giardia lamblia

      JOURNAL OF MOLECULAR BIOLOGY
    28. Chua, BH; McMinn, PC; Lam, SK; Chua, KB
      Comparison of the complete nucleotide sequences of echovirus 7 strain UMMCand the prototype (Wallace) strain demonstrates significant genetic drift over time

      JOURNAL OF GENERAL VIROLOGY
    29. Zhou, HJ; Zhang, Y
      Pulling hairpinned polynucleotide chains: Does base-pair stacking interaction matter?

      JOURNAL OF CHEMICAL PHYSICS
    30. Zhang, WB; Chen, SJ
      A three-dimensional statistical mechanical model of folding double-stranded chain molecules

      JOURNAL OF CHEMICAL PHYSICS
    31. Beerens, N; Groot, F; Berkhout, B
      Initiation of HIV-1 reverse transcription is regulated by a primer activation signal

      JOURNAL OF BIOLOGICAL CHEMISTRY
    32. Kagawa, N; Cao, QW
      Osmotic stress induced by carbohydrates enhances expression of foreign proteins in Escherichia coli

      ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
    33. Mortreux, F; Leclercq, I; Gabet, AS; Leroy, A; Westhof, E; Gessain, A; Wain-Hobson, S; Wattel, E
      Somatic mutation in human T-cell leukemia virus type 1 provirus and flanking cellular sequences during clonal expansion in vivo

      JOURNAL OF THE NATIONAL CANCER INSTITUTE
    34. Tu, MH; Tong, WD; Perkins, R; Valentine, CR
      Predicted changes in pre-mRNA secondary structure vary in their association with exon skipping for mutations in exons 2, 4, and 8 of the Hprt gene and exon 51 of the fibrillin gene

      MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH
    35. Sankoff, D
      The early introduction of dynamic programming into computational biology

      BIOINFORMATICS
    36. Haasnoot, PCJ; Brederode, FT; Olsthoorn, RCL; Bol, JF
      A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro

      RNA-A PUBLICATION OF THE RNA SOCIETY
    37. Dale, T; Smith, R; Serra, MJ
      A test of the model to predict unusually stable RNA hairpin loop stability

      RNA-A PUBLICATION OF THE RNA SOCIETY
    38. Flamm, C; Fontana, W; Hofacker, IL; Schuster, P
      RNA folding at elementary step resolution

      RNA-A PUBLICATION OF THE RNA SOCIETY
    39. Guo, L; Allen, E; Miller, WA
      Structure and function of a cap-independent translation element that functions in either the 3 ' or the 5 ' untranslated region

      RNA-A PUBLICATION OF THE RNA SOCIETY
    40. Fekete, M; Hofacker, IL; Stadler, PF
      Prediction of RNA base pairing probabilities on massively parallel computers

      JOURNAL OF COMPUTATIONAL BIOLOGY
    41. Moulton, V; Zuker, M; Steel, M; Pointon, R; Penny, D
      Metrics on RNA secondary structures

      JOURNAL OF COMPUTATIONAL BIOLOGY
    42. Wiegmann, BM; Mitter, C; Regier, JC; Friedlander, TP; Wagner, DM; Nielsen, ES
      Nuclear genes resolve Mesozoic-aged divergences in the insect order Lepidoptera

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    43. Medina, M; Walsh, PJ
      Molecular systematics of the order Anaspidea based on mitochondrial DNA sequence (12S, 16S, and COI)

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    44. Lydeard, C; Holznagel, WE; Schnare, MN; Gutell, RR
      Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    45. Hancock, JM; Vogler, AP
      How slippage-derived sequences are incorporated into rRNA variable-region secondary structure: Implications for phylogeny reconstruction

      MOLECULAR PHYLOGENETICS AND EVOLUTION
    46. Toschi, N
      Influence of mRNA self-structure on hybridization: Computational tools forantisense sequence selection

      METHODS-A COMPANION TO METHODS IN ENZYMOLOGY
    47. Duriez, P; Lesimple, M; Allo, MR; Hardy, S
      Alternative splicing of Xenopus alpha(fast)-tropomyosin pre-mRNA during development: Identification of determining sequences

      DNA AND CELL BIOLOGY
    48. Han, K
      A graphical tool for parametric simulation of the RNA structure formation

      MOLECULES AND CELLS
    49. Buckley, TR; Simon, C; Flook, PK; Misof, B
      Secondary structure and conserved motifs of the frequently sequenced domains IV and V of the insect mitochondrial large subunit rRNA gene

      INSECT MOLECULAR BIOLOGY
    50. Smith, L; Andersen, KB; Hovgaard, L; Jaroszewski, JW
      Rational selection of antisense oligonucleotide sequences

      EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES
    51. Diwa, A; Bricker, AL; Jain, C; Belasco, JG
      An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression

      GENES & DEVELOPMENT
    52. Szymanski, M; Barciszewska, MZ; Erdmann, VA; Barciszewski, J
      An analysis of G-U base pair occurrence in eukaryotic 5S rRNAs

      MOLECULAR BIOLOGY AND EVOLUTION
    53. Noor, MAF; Larkin, JC
      A re-evaluation of 12S ribosomal RNA variability in Drosophila pseudoobscura

      MOLECULAR BIOLOGY AND EVOLUTION
    54. Meijer, HA; Dictus, WJAG; Thomas, AAM
      Cloning and analysis of the untranslated regions of the Xenopus laevis Connexin30 mRNA

      GENE
    55. Wrzesinski, J; Legiewicz, M; Ciesiolka, J
      Mapping of accessible sites for oligonucleotide hybridization on hepatitisdelta virus ribozymes

      NUCLEIC ACIDS RESEARCH
    56. Raca, G; Siyanova, EY; McMurray, CT; Mirkin, SM
      Expansion of the (CTG)(n) repeat in the 5 '-UTR of a reporter gene impedestranslation

      NUCLEIC ACIDS RESEARCH
    57. Jiang, ZH; Cote, J; Kwon, JM; Goate, AM; Wu, JY
      Aberrant splicing of tau pre-mRNA caused by intronic mutations associated with the inherited dementia frontotemporal dementia with parkinsonism linked to chromosome 17

      MOLECULAR AND CELLULAR BIOLOGY
    58. Inokuchi, Y; Hirashima, A; Sekine, Y; Janosi, L; Kaji, A
      Role of ribosome recycling factor (RRF) in translational coupling

      EMBO JOURNAL
    59. Graham, SW; Olmstead, RG
      Evolutionary significance of an unusual chloroplast DNA inversion found intwo basal angiosperm lineages

      CURRENT GENETICS
    60. Shih, SR; Ho, MS; Lin, KH; Wu, SL; Chen, YT; Wu, CN; Lin, TY; Chang, LY; Tsao, KC; Ning, HC; Chang, PY; Jung, SM; Hsueh, C; Chang, KS
      Genetic analysis of enterovirus 71 isolated from fatal and non-fatal casesof hand, foot and mouth disease during an epidemic in Taiwan, 1998

      VIRUS RESEARCH
    61. Liu, WR; Kim, J; Nwankwo, C; Ashworth, LK; Arm, JP
      Genomic organization of the human leukocyte immunoglobulin-like receptors within the leukocyte receptor complex on Chromosome 19q13.4

      IMMUNOGENETICS
    62. Ziegler, A; Simoes-Wuest, AP; Zangemeister-Wittke, U
      Optimizing efficacy of antisense oligodeoxynucleotides targeting inhibitors of apoptosis

      ANTISENSE TECHNOLOGY, PT B
    63. Rowe, A; Ferguson, GL; Minor, PD; Macadam, AJ
      Coding changes in the poliovirus protease 2A compensate for 5 ' NCR domainV disruptions in a cell-specific manner

      VIROLOGY
    64. Cardozo, AK; De Meirleir, L; Liebaers, I; Lissens, W
      Analysis of exonic mutations leading to exon skipping in patients with pyruvate dehydrogenase E1 alpha deficiency

      PEDIATRIC RESEARCH
    65. Morita, MT; Kanemori, M; Yanagi, H; Yura, T
      Dynamic interplay between antagonistic pathways controlling the sigma(32) level in Escherichia coli

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    66. Kelchner, SA
      The evolution of non-coding chloroplast DNA and its application in plant systematics

      ANNALS OF THE MISSOURI BOTANICAL GARDEN
    67. Mikkelsen, JG; Lund, AH; Duch, M; Pedersen, FS
      Mutations of the kissing-loop dimerization sequence influence the site specificity of murine leukemia virus recombination in vivo

      JOURNAL OF VIROLOGY
    68. Ohi, Y; Clever, JL
      Sequences in the 5 ' and 3 ' R elements of human immunodeficiency virus type 1 critical for efficient reverse transcription

      JOURNAL OF VIROLOGY
    69. Svarovskaia, ES; Delviks, KA; Hwang, CK; Pathak, VK
      Structural determinants of murine leukemia virus reverse transcriptase that affect the frequency of template switching

      JOURNAL OF VIROLOGY
    70. Goodfellow, I; Chaudhry, Y; Richardson, A; Meredith, J; Almond, JW; Barclay, W; Evans, DJ
      Identification of a cis-acting replication element within the poliovirus coding region

      JOURNAL OF VIROLOGY
    71. Moulton, V; Gardner, PP; Pointon, RF; Creamer, LK; Jameson, GB; Penny, D
      RNA folding argues against a hot-start origin of life

      JOURNAL OF MOLECULAR EVOLUTION
    72. Collins, LJ; Moulton, V; Penny, D
      Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP

      JOURNAL OF MOLECULAR EVOLUTION
    73. Rodriguez-Trelles, F; Tarrio, R; Ayala, FJ
      Disparate evolution of paralogous introns in Xdh gene of Drosophila

      JOURNAL OF MOLECULAR EVOLUTION
    74. van Dijk, EL; Sussenbach, JS; Holthuizen, PE
      Distinct RNA structural domains cooperate to maintain a specific cleavage site in the 3 '-UTR of IGF-II mRNAs

      JOURNAL OF MOLECULAR BIOLOGY
    75. Roshick, C; Iliffe-Lee, ER; McClarty, G
      Cloning and characterization of ribonucleotide reductase from Chlamydia trachomatis

      JOURNAL OF BIOLOGICAL CHEMISTRY
    76. Meijer, HA; Dictus, WJAG; Keuning, ED; Thomas, AAM
      Translational control of the Xenopus laevis Connexin-41 5 '-untranslated region by three upstream open reading frames

      JOURNAL OF BIOLOGICAL CHEMISTRY
    77. Bergsdorf, C; Paliga, K; Kreger, S; Masters, CL; Beyreuther, K
      Identification of cis-elements regulating exon 15 splicing of the amyloid precursor protein pre-mRNA

      JOURNAL OF BIOLOGICAL CHEMISTRY
    78. Goupil-Feuillerat, N; Corthier, G; Godon, JJ; Ehrlich, SD; Renault, P
      Transcriptional and translational regulation of alpha-acetolactate decarboxylase of Lactococcus lactis subsp lactis

      JOURNAL OF BACTERIOLOGY
    79. Bonifield, HR; Yamaguchi, S; Hughes, KT
      The flagellar hook protein, FlgE, of Salmonella enterica serovar typhimurium is posttranscriptionally regulated in response to the stage of flagellarassembly

      JOURNAL OF BACTERIOLOGY
    80. Yanofsky, C
      Transcription attenuation: Once viewed as a novel regulatory strategy

      JOURNAL OF BACTERIOLOGY
    81. Wang, JTL; Zhang, KZ
      Identifying consensus of trees through alignment

      INFORMATION SCIENCES
    82. Akutsu, T
      Dynamic programming algorithms for RNA secondary structure prediction withpseudoknots

      DISCRETE APPLIED MATHEMATICS
    83. Akutsu, T
      Approximation and exact algorithms for RNA secondary structure prediction and recognition of stochastic context-free languages

      JOURNAL OF COMBINATORIAL OPTIMIZATION
    84. Goodrich, AF; Steege, DA
      Roles of polyadenylation and nucleolytic cleavage in the filamentous phagemRNA processing and decay pathways in Escherichia coli

      RNA-A PUBLICATION OF THE RNA SOCIETY
    85. Zhang, GC; Slowinski, V; White, KA
      Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus

      RNA-A PUBLICATION OF THE RNA SOCIETY
    86. Repsilber, D; Wiese, S; Rachen, M; Schroder, AW; Riesner, D; Steger, G
      Formation of metastable RNA structures by sequential folding during transcription: Time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis

      RNA-A PUBLICATION OF THE RNA SOCIETY
    87. Mathews, DH; Burkard, ME; Freier, SM; Wyatt, JR; Turner, DH
      Predicting oligonucleotide affinity to nucleic acid targets

      RNA-A PUBLICATION OF THE RNA SOCIETY
    88. Craster, HL; Potter, CA; Baumberg, S
      End-product control of expression of branched-chain amino acid biosynthesis genes in Streptomyces coelicolor A3(2): paradoxical relationships betweenDNA sequence and regulatory phenotype

      MICROBIOLOGY-UK
    89. Mir, KU; Southern, EM
      Determining the influence of structure on hybridization using oligonucleotide arrays

      NATURE BIOTECHNOLOGY
    90. George, JA; Eickbush, TH
      Conserved features at the 5 ' end of Drosophila R2 retrotransposable elements: implications for transcription and translation

      INSECT MOLECULAR BIOLOGY
    91. Condo, I; Ciammaruconi, A; Benelli, D; Ruggero, D; Londei, P
      Cis-acting signals controlling translational initiation in the thermophilic archaeon Sulfolobus solfataricus

      MOLECULAR MICROBIOLOGY
    92. Werner, T
      Models for prediction and recognition of eukaryotic promoters

      MAMMALIAN GENOME
    93. Kozak, M
      Initiation of translation in prokaryotes and eukaryotes

      GENE
    94. Shinohara, ML; LoBuglio, KF; Rogers, SO
      Comparison of ribosomal DNA ITS regions among geographic isolates of Cenococcum geophilum

      CURRENT GENETICS
    95. Proutski, V; Gritsun, TS; Gould, EA; Holmes, EC
      Biological consequences of deletions within the 3 '-untranslated region offlaviviruses may be due to rearrangements of RNA secondary structure

      VIRUS RESEARCH
    96. Schuster, P; Fontana, W
      Chance and necessity in evolution: lessons from RNA

      PHYSICA D
    97. Hattman, S
      Unusual transcriptional and translational regulation of the bacteriophage Mu mom operon

      PHARMACOLOGY & THERAPEUTICS
    98. Esipov, RS; Gurevich, AI; Kayushin, AL; Korosteleva, MD; Belova, MA
      The dependence of the E. coli gene expression level on the structure of the translation initiation region (TIR). IV. Distal complementary TIR interactions with the mRNA coding region

      BIOORGANICHESKAYA KHIMIYA
    99. Ding, Y; Lawrence, CE
      A Bayesian statistical algorithm for RNA secondary structure prediction

      COMPUTERS & CHEMISTRY
    100. Hofacker, IL; Stadler, PF
      Automatic detection of conserved base pairing patterns in RNA virus genomes

      COMPUTERS & CHEMISTRY


ASDD Area Sistemi Dipartimentali e Documentali, Università di Bologna, Catalogo delle riviste ed altri periodici
Documento generato il 03/08/20 alle ore 16:56:45