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    1. Sponer, JE; Glahe, F; Leszczynski, J; Lippert, B; Sponer, J
      How nucleobases rotate when bonded to a metal ion: Detailed view from an ab initio quantum chemical study of a cytosine complex of trans-a(2)Pt(II)

      JOURNAL OF PHYSICAL CHEMISTRY B
    2. Smith, DMA; Adamowicz, L
      A dynamic model for electron transport in DNA

      JOURNAL OF PHYSICAL CHEMISTRY B
    3. Chandrakumar, KRS; Pal, S
      A novel theoretical model for molecular recognition of multiple-site interacting systems using density response functions

      JOURNAL OF PHYSICAL CHEMISTRY B
    4. Li, HY; Qiu, YL; Kishi, Y
      Solution structure of n-type DNA oligomers possessing a covalently cross-linked Watson-Crick base pair model

      CHEMBIOCHEM
    5. Bruning, W; Sigel, RKO; Freisinger, E; Lippert, B
      Pt-II binding to N1 of cytosine: Strengthening the Watson-Crick pair with guanine and yet confining its pH existence range

      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
    6. Obika, S; Hari, Y; Sekiguchi, M; Imanishi, T
      A 2',4'-bridged nucleic acid containing 2-pyridone as a nucleobase: Efficient recognition of a C center dot G interruption by tripler formation with a pyrimidine motif

      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
    7. Lim, VI; Curran, JF
      Analysis of codon : anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure

      RNA-A PUBLICATION OF THE RNA SOCIETY
    8. Junop, MS; Obmolova, G; Rausch, K; Hsieh, P; Yang, W
      Composite active site of an ABC ATPase: MutS uses ATP to verify mismatch recognition and authorize DNA repair

      MOLECULAR CELL
    9. Chen, JYF; Stands, L; Staley, JP; Jackups, RR; Latus, LJ; Chang, TH
      Specific alterations of U1-C protein or U1 small nuclear RNA can eliminatethe requirement of Prp28p, an essential DEAD box splicing factor

      MOLECULAR CELL
    10. Ryjacek, F; Engkvist, O; Vacek, J; Kratochvil, M; Hobza, P
      Hoogsteen and stacked structures of the 9-methyladenine center dot center dot center dot 1-methylthymine pair are populated equally at experimental conditions: Ab initio and molecular dynamics study

      JOURNAL OF PHYSICAL CHEMISTRY A
    11. Hung, FT; Hu, WP; Chou, PT
      The ground- and excited-state ((1)n pi* and (1)pi pi*) carboxylic acid-catalyzed proton (hydrogen atom)-transfer energy surfaces in 3-formyl-7-azaindole

      JOURNAL OF PHYSICAL CHEMISTRY A
    12. Yokoyama, F; Watanabe, H; Omi, T; Ishiuchi, S; Fujii, M
      Structure of hydrogen-bonded clusters of 7-azaindole studied by IR dip spectroscopy and ab initio molecular orbital calculation

      JOURNAL OF PHYSICAL CHEMISTRY A
    13. Rueda, M; Luque, FJ; Lopez, JM; Orozco, M
      Amino-imino tautomerism in derivatives of cytosine: Effect on hydrogen-bonding and stacking properties

      JOURNAL OF PHYSICAL CHEMISTRY A
    14. Zhang, Q; Harada, K; Cho, HS; Frankel, AD; Wemmer, DE
      Structural characterization of the complex of the Rev response element RNAwith a selected peptide

      CHEMISTRY & BIOLOGY
    15. Gosser, Y; Hermann, T; Majumdar, A; Hu, WD; Frederick, R; Jiang, F; Xu, WJ; Patel, DJ
      Peptide-triggered conformational switch in HIV-1 RRE RNA complexes

      NATURE STRUCTURAL BIOLOGY
    16. Dingley, AJ; Cordier, F; Grzesiek, S
      An introduction to hydrogen bond scalar couplings

      CONCEPTS IN MAGNETIC RESONANCE
    17. Liang, TB; Tan, KH; Chong, K; Zhu, ZQ; Pongor, S; Simoncsits, A
      Selection and design of high affinity DNA ligands for mutant single-chain derivatives of the bacteriophage 434 repressor

      SCIENCE IN CHINA SERIES C-LIFE SCIENCES
    18. Xiao, JH; Yuan, G; Huang, WQ
      Synthesis of distamycin analogs and their interactions with calf thymus DNA

      CHINESE JOURNAL OF CHEMISTRY
    19. Gianolio, DA; McLaughlin, LW
      Tethered naphthalene diimide intercalators enhance DNA triplex stability

      BIOORGANIC & MEDICINAL CHEMISTRY
    20. Li, VS; Tang, MS; Kohn, H
      The effect of C(5) cytosine methylation at CpG sequences on mitomycin-DNA bonding profiles

      BIOORGANIC & MEDICINAL CHEMISTRY
    21. Nguyen, DH; Szewczyk, JW; Baird, EE; Dervan, PB
      Alternative heterocycles for DNA recognition: An N-methylpyrazole/N-methylpyrrole pair specifies for A center dot T/T center dot A biase pairs

      BIOORGANIC & MEDICINAL CHEMISTRY
    22. Zidek, L; Stefl, R; Sklenar, V
      NMR methodology for the study of nucleic acids

      CURRENT OPINION IN STRUCTURAL BIOLOGY
    23. Sigel, RKO; Thompson, SM; Freisinger, E; Glahe, F; Lippert, B
      Metal-modified nucleobase sextet: Joining four linear metal fragments (trans-a(2)Pt(II)) and six model nucleobases to an exceedingly stable entity

      CHEMISTRY-A EUROPEAN JOURNAL
    24. Luth, MS; Freisinger, E; Lippert, B
      Metal-modified nucleobase pairs and triplets as cytosine receptors

      CHEMISTRY-A EUROPEAN JOURNAL
    25. Han, XG; Gao, XL
      Sequence specific recognition of ligand-DNA complexes studied by NMR

      CURRENT MEDICINAL CHEMISTRY
    26. Wu, ZR; Ono, A; Kainosho, M; Bax, A
      H center dot center dot center dot N hydrogen bond lengths in double stranded DNA from internucleotide dipolar couplings

      JOURNAL OF BIOMOLECULAR NMR
    27. Bryce, DL; Wasylishen, RE
      Modeling (2h)J(iso)(N,N) in nucleic acid base pairs: Ab initio characterization of the (2h)J(N, N) tensor in the methyleneimine dimer as a function of hydrogen bond geometry

      JOURNAL OF BIOMOLECULAR NMR
    28. Majumdar, A; Kettani, A; Skripkin, E; Patel, DJ
      Pulse sequences for detection of NH2 center dot center dot center dot N hydrogen bonds in sheared G center dot A mismatches via remote, non-exchangeable protons

      JOURNAL OF BIOMOLECULAR NMR
    29. Chou, SH; Chin, KH; Chen, CW
      Enhanced loop DNA folding induced by thymine-CH3 group contact and perpendicular guanine-thymine interaction

      JOURNAL OF BIOMOLECULAR NMR
    30. Cote, ML; Georgiadis, MM
      Structure of a pseudo-16-mer DNA with stacked guanines and two G-A mispairs complexed with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase

      ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
    31. Savitha, G; Leonidas, D; Acharya, KR; Viswamitra, MA
      Crystallization and preliminary investigations on a telomeric repeat sequence C(4)A(2)C(4)A(2)

      ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
    32. Perbandt, M; Vallazza, M; Lippmann, C; Betzel, C; Erdmann, VA
      Structure of an RNA duplex with an unusual G center dot C pair in wobble-like conformation at 1.6 angstrom resolution

      ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
    33. Pietrzak, M; Limbach, HH; Perez-Torralba, M; Sanz, D; Claramunt, RM; Elguero, J
      Scalar coupling constants across the intramolecular NHN hydrogen bond of symmetrically and non-symmetrically substituted 6-aminofulvene-1-aldimines

      MAGNETIC RESONANCE IN CHEMISTRY
    34. Barfield, M; Bergset, JM; O'Leary, DJ
      Density functional theory studies of transannular H-1-H-1 J-coupling in half-cage alcohols and rigid 1,3-and 1,4-diols: conformational dependencies and implications for intramolecular hydrogen bond detection in carbohydrates

      MAGNETIC RESONANCE IN CHEMISTRY
    35. Majumdar, A
      Applications of H-1(a)-H-1(d) correlated (2h)J(N,N) spectroscopy for identifying H-a-C-N-a center dot center dot center dot H-d-N-d hydrogen bonds innucleic acids

      MAGNETIC RESONANCE IN CHEMISTRY
    36. Pataskar, SS; Dash, D; Brahmachari, SK
      Intramolecular i-motif structure at acidic pH for Progressive Myoclonus Epilepsy (EPM1) repeat d(CCCCGCCCCGCG)(n)

      JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
    37. Surovaya, AN; Burckhardt, G; Grokhovsky, SL; Birch-Hirschfeld, E; Nikitin, AM; Fritzsche, H; Zimmer, C; Gursky, GV
      Binding of bis-linked netropsin derivatives in the parallel-stranded hairpin form to DNA

      JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
    38. Shchyolkina, AK; Borisova, OF; Livshits, MA; Klement, R; Jovin, TM
      The telomeric dG(GT)(4)G sequence can adopt a parallel-stranded double helical conformation

      JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
    39. Sills, RC; French, JE; Cunningham, ML
      New models for assessing carcinogenesis: An ongoing process

      TOXICOLOGY LETTERS
    40. Hawkins, CA; Watson, C; Yan, YF; Gong, B; Wemmer, DE
      Structural analysis of the binding modes of minor groove ligands comprisedof disubstituted benzenes

      NUCLEIC ACIDS RESEARCH
    41. Adamiak, DA; Rypniewski, WR; Milecki, J; Adamiak, RW
      The 1.19 angstrom X-ray structure of 2 '-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove

      NUCLEIC ACIDS RESEARCH
    42. Jiang, LH; Russu, IM
      Proton exchange and local stability in a DNA triple helix containing a G.TA triad

      NUCLEIC ACIDS RESEARCH
    43. Parel, SP; Leumann, CJ
      Triple-helix formation in the antiparallel binding motif of oligodeoxynucleotides containing N-9- and N-7-2-aminopurine deoxynucleosides

      NUCLEIC ACIDS RESEARCH
    44. Kierzek, E; Kierzek, R
      Influence of N6-isopentenyladenosine (i(6)A) on thermal stability of RNA duplexes

      BIOPHYSICAL CHEMISTRY
    45. Brown, J; Brown, T; Fox, KR
      Affinity of mismatch-binding protein MutS for heteroduplexes containing different mismatches

      BIOCHEMICAL JOURNAL
    46. Ballantyne, B; Jordan, SL
      Toxicological, medical and industrial hygiene aspects of glutaraldehyde with particular reference to its biocidal use in cold sterilization procedures

      JOURNAL OF APPLIED TOXICOLOGY
    47. Meyer, M; Steinke, T; Brandl, M; Suhnel, J
      Density functional study of guanine and uracil quartets and of guanine quartet/metal ion complexes

      JOURNAL OF COMPUTATIONAL CHEMISTRY
    48. Raimondi, M; Famulari, A; Specchio, R; Sironi, M; Moroni, F; Gianinetti, E
      Ab initio non-orthogonal approaches to the computation of weak interactions and of localised molecular orbitals for QM/MM procedures

      JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM
    49. Sponer, JE; Sponer, J; Cejka, J
      Ab initio quantum chemical study on the zeolite catalyzed transformations of para-xylene

      JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM
    50. Suzuki, T; Whitaker, BJ
      Non-adiabatic effects in chemistry revealed by time-resolved charged-particle imaging

      INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY
    51. Allen, M; Varani, L; Varani, G
      Nuclear magnetic resonance methods to study structure and dynamics of RNA-protein complexes

      NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PT B
    52. Grzesiek, S; Cordier, F; Dingley, AJ
      Scalar couplings across hydrogen bonds

      NUCLEAR MAGNETIC RESONANCE OF BIOLOGICA MACROMOLECULES, PT A
    53. Robles, J; Grandas, A; Pedroso, E
      Synthesis of modified oligonucleotides containing 4-guanidino-2-pyrimidinone nucleobases

      TETRAHEDRON
    54. Stamos, DN
      Quantum indeterminism and evolutionary biology

      PHILOSOPHY OF SCIENCE
    55. Urbach, AR; Dervan, PB
      Toward rules for 1 : 1 polyamide : DNA recognition

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    56. Van Hise, JR
      Particle tunnelling in the 7-azaindole dimer

      MOLECULAR PHYSICS
    57. Sharma, SK; Tandon, M; Lown, JW
      A general solution- and solid-phase synthetic procedure for incorporating three contiguous imidazole moieties into DNA sequence reading polyamides

      JOURNAL OF ORGANIC CHEMISTRY
    58. Jain, ML; Tsao, YP; Ho, NL; Cheng, JW
      A Facile Synthesis of [N1,NH2-N-15(2)]-, [N3,NH2-N-15(2)]-, and [N1,N3,NH2-N-15(3)]-labeled adenine

      JOURNAL OF ORGANIC CHEMISTRY
    59. Peppas, E; Anastassopoulou, J; Theophanides, T
      Supramolecular interactions between a barbiturato copper(II) complex and 2,6-bis(alcanoylamino)pyridines

      JOURNAL OF MOLECULAR STRUCTURE
    60. Csaszar, K; Spackova, N; Stefl, R; Sponer, J; Leontis, NB
      Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: The role of non- Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding

      JOURNAL OF MOLECULAR BIOLOGY
    61. Mack, DR; Chiu, TK; Dickerson, RE
      Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: A comparative analysis of T-A and A-T steps within A-tracts

      JOURNAL OF MOLECULAR BIOLOGY
    62. Elgavish, T; Cannone, JJ; Lee, JC; Harvey, SC; Gutell, RR
      AA.AG@Helix.Ends: A : A and A : G base-pairs at the ends of 16 S and 23 S rRNA helices

      JOURNAL OF MOLECULAR BIOLOGY
    63. Nonin-Lecomte, S; Leroy, JL
      Structure of a C-rich strand fragment of the human centromeric satellite III: A pH-dependent intercalation topology

      JOURNAL OF MOLECULAR BIOLOGY
    64. Breusegem, SY; Sadat-Ebrahimi, SE; Douglas, KT; Clegg, RM; Loontiens, FG
      Increased stability and lifetime of the complex formed between DNA and meta-phenyl-substituted Hoechst dyes as studied by fluorescence titrations andstopped-flow kinetics

      JOURNAL OF MOLECULAR BIOLOGY
    65. Flinders, J; Dieckmann, T
      A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA

      JOURNAL OF MOLECULAR BIOLOGY
    66. Wu, M; Schleif, R
      Mapping arm-DNA-binding domain interactions in AraC

      JOURNAL OF MOLECULAR BIOLOGY
    67. Auffinger, P; Westhof, E
      Water and ion binding around r(UpA)(12) and d(TpA)(12) oligomers - Comparison with RNA and DNA (CpG)(12) duplexes

      JOURNAL OF MOLECULAR BIOLOGY
    68. Biswas, I; Obmolova, G; Takahashi, M; Herr, A; Newman, MA; Yang, W; Hsieh, P
      Disruption of the helix-u-turn-helix motif of MutS protein: Loss of subunit dimerization, mismatch binding and ATP hydrolysis

      JOURNAL OF MOLECULAR BIOLOGY
    69. Pecul, M; Sadlej, J; Leszczynski, J
      The F-19-H-1 coupling constants transmitted through covalent, hydrogen bond, and van der Waals interactions

      JOURNAL OF CHEMICAL PHYSICS
    70. Torigoe, H; Hari, Y; Sekiguchi, M; Obika, S; Imanishi, T
      2 '-O,4 '-C-methylene bridged nucleic acid modification promotes pyrimidine motif tripler DNA formation at physiological pH - Thermodynamic and kinetic studies

      JOURNAL OF BIOLOGICAL CHEMISTRY
    71. Blackwell, LJ; Bjornson, KP; Allen, DJ; Modrich, P
      Distinct MutS DNA-binding modes that are differentially modulated by ATP binding and hydrolysis

      JOURNAL OF BIOLOGICAL CHEMISTRY
    72. Blackwell, LJ; Wang, ST; Modrich, P
      DNA chain length dependence of formation and dynamics of hMutS alpha(.)hMutL alpha(.)heteroduplex complexes

      JOURNAL OF BIOLOGICAL CHEMISTRY
    73. Scheiner, S; Kar, T; Gu, YL
      Strength of the (CH)-H-alpha center dot center dot O hydrogen bond of amino acid residues

      JOURNAL OF BIOLOGICAL CHEMISTRY
    74. Serrano-Andres, L; Merchan, M; Borin, AC; Stalring, J
      Theoretical studies on the spectroscopy of the 7-azaindole monomer and dimer

      INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY
    75. Alagona, G; Ghio, C; Monti, S
      Ab initio modeling of competitive drug-drug interactions: 5-fluorouracil dimers in the gas phase and in solution

      INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY
    76. Sponer, JE; Leszczynski, J; Glahe, F; Lippert, B; Sponer, J
      Protonation of platinated adenine nucleobases. Gas phase vs condensed phase picture

      INORGANIC CHEMISTRY
    77. Xodo, LE; Rathinavelan, T; Quadrifoglio, F; Manzini, G; Yathindra, N
      Targeting neighbouring poly(purine center dot pyrimidine) sequences located in the human bcr promoter by triplex-forming oligonucleotides

      EUROPEAN JOURNAL OF BIOCHEMISTRY
    78. Yakubovskaya, MG; Neschastnova, AA; Humphrey, KE; Babon, JJ; Popenko, VI; Smith, MJ; Lambrinakos, A; Lipatova, ZV; Dobrovolskaia, MA; Cappai, R; Masters, CL; Belitsky, GA; Cotton, RG
      Interaction of linear homologous DNA duplexes via Holliday junction formation

      EUROPEAN JOURNAL OF BIOCHEMISTRY
    79. Chou, PT
      The host/guest type of excited-state proton transfer; A general review

      JOURNAL OF THE CHINESE CHEMICAL SOCIETY
    80. Lai, CC; Shen, CC; Hu, CH
      A comparative study of hydrogen bonding using density functional theory

      JOURNAL OF THE CHINESE CHEMICAL SOCIETY
    81. Takeuchi, S; Tahara, T
      Excitation-wavelength dependence of the femtosecond fluorescence dynamics of 7-azaindole dimer: further evidence for the concerted double proton transfer in solution

      CHEMICAL PHYSICS LETTERS
    82. Weiss, J; May, V; Ernsting, NP; Farztdinov, V; Muhlpfordt, A
      Frequency and time-domain analysis of excited-state intramolecular proton transfer. Double-proton transfer in 2,5-bis(2-benzoxazolyl)-hydroquinone?

      CHEMICAL PHYSICS LETTERS
    83. Gu, JD; Leszczynski, J
      The structure, stability, H-bonding pattern, and electrostatic potential of adenine tetrads

      CHEMICAL PHYSICS LETTERS
    84. Wellenzohn, B; Flader, W; Winger, RH; Hallbrucker, A; Mayer, E; Liedl, KR
      Significance of ligand tails for interaction with the minor groove of B-DNA

      BIOPHYSICAL JOURNAL
    85. Stefl, R; Spackova, N; Berger, I; Koca, J; Sponer, J
      Molecular dynamics of DNA quadruplex molecules containing inosine, 6-thioguanine and 6-thiopurine

      BIOPHYSICAL JOURNAL
    86. Burkard, ME; Xia, TB; Turner, DH
      Thermodynamics of RNA internal loops with a guanosine-guanosine pair adjacent to another noncanonical pair

      BIOCHEMISTRY
    87. Zhai, G; Iskandar, M; Barilla, K; Romaniuk, PJ
      Characterization of RNA aptamer binding by the Wilms' tumor suppressor protein WT1

      BIOCHEMISTRY
    88. Klewer, DA; Zhang, PM; Bergstrom, DE; Davisson, VJ; LiWang, AC
      Conformations of nucleoside analogue 1-(2 '-deoxy-beta-D-ribofuranosyl)-1,2,4-triazole-3-carboxamide in different DNA sequence contexts

      BIOCHEMISTRY
    89. Kerwood, DJ; Cavaluzzi, MJ; Borer, PN
      Structure of SL4 RNA from the HIV-1 packaging signal

      BIOCHEMISTRY
    90. Huang, JM; Lu, J; Barany, F; Cao, WG
      Multiple cleavage activities of endonuclease V from Thermotoga maritima: Recognition and strand nicking mechanism

      BIOCHEMISTRY
    91. Sugimoto, N; Satoh, N; Yasuda, K; Nakano, S
      Stabilization factors affecting duplex formation of peptide nucleic acid with DNA

      BIOCHEMISTRY
    92. Diamond, JM; Turner, DH; Mathews, DH
      Thermodynamics of three-way multibranch loops in RNA

      BIOCHEMISTRY
    93. Hamilton, TB; Turner, J; Barilla, K; Romaniuk, PJ
      Contribution of individual amino acids to the nucleic acid binding activities of the Xenopus zinc finger proteins TFIIIIA and p43

      BIOCHEMISTRY
    94. Larsson, SL; Nygard, O
      Proposed secondary structure of eukaryote specific expansion segment 15 in28S rRNA from mice, rats, and rabbits

      BIOCHEMISTRY
    95. Baliga, R; Baird, EE; Herman, DM; Melander, C; Dervan, PB; Crothers, DM
      Kinetic consequences of covalent linkage of DNA binding polyamides

      BIOCHEMISTRY
    96. Shanti, K; Kanungo, MS
      Interaction of nuclear proteins with repeat sequences in the 5 ' flanking region of mouse muscle creatine kinase gene during aging

      BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
    97. Lan, T; McLaughlin, LW
      The energetic contribution of a bifurcated hydrogen bond to the binding ofDAPI to dA-dT rich sequences of DNA

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    98. Wilkens, SJ; Westler, WM; Markley, JL; Weinhold, F
      Natural J-coupling analysis: Interpretation of scalar J-couplings in termsof natural bond orbitals

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    99. Czernek, J; Bruschweiler, R
      Geometric dependence of (3h)J(P-31-N-15) and (2h)J(P-31-H-1) scalar couplings in protein-nucleotide complexes

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    100. Al-Hashimi, HM; Majumdar, A; Gorin, A; Kettani, A; Skripkin, E; Patel, DJ
      Field- and phage-induced dipolar couplings in a homodimeric DNA quadruplex, relative orientation of G center dot(C-A) triad and G-tetrad motifs and direct determination of C2 symmetry axis orientation

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY


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Documento generato il 14/08/20 alle ore 10:57:18