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1. Asthagiri, AR; Lauffenburger, DA
   A computational study of feedback effects on signal dynamics in a mitogen-activated protein kinase (MAPK) pathway model
   BIOTECHNOLOGY PROGRESS
   
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2. Ideker, T; Galitski, T; Hood, L
   A new approach to decoding life: Systems biology
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3. Rao, CV; Arkin, AP
   Control motifs for intracellular regulatory networks
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4. Hasty, J; McMillen, D; Isaacs, F; Collins, JJ
   Computational studies of gene regulatory networks: In numero molecular biology
   NATURE REVIEWS GENETICS
   
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5. Barkai, N; Alon, U; Leibler, S
   Robust amplification in adaptive signal transduction networks
   COMPTES RENDUS DE L ACADEMIE DES SCIENCES SERIE IV PHYSIQUE ASTROPHYSIQUE
   
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6. Lee, SY; Cho, HS; Pelton, JG; Yan, DL; Henderson, RK; King, DS; Huang, LS; Kustu, S; Berry, EA; Wemmer, DE
   Crystal structure of an activated response regulator bound to its target
   NATURE STRUCTURAL BIOLOGY
   
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7. Tyson, JJ; Mackey, MC
   Molecular, metabolic, and genetic control: An introduction
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8. Gestwicki, JE; Strong, LE; Borchardt, SL; Cairo, CW; Schnoes, AM; Kiessling, LL
   Designed potent multivalent chemoattractants for Escherichia coli
   BIOORGANIC & MEDICINAL CHEMISTRY
   
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9. Arkin, AP
   Synthetic cell biology
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10. Kirby, JR; Kristich, CJ; Saulmon, MM; Zimmer, MA; Garrity, LF; Zhulin, IB; Ordal, GW
    CheC is related to the family of flagellar switch proteins and acts independently from CheD to control chemotaxis in Bacillus subtilis
    MOLECULAR MICROBIOLOGY
    
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11. Perego, M
    A new family of aspartyl phosphate phosphatases targeting the sporulation transcription factor Spo0A of Bacillus subtilis
    MOLECULAR MICROBIOLOGY
    
    M. Perego, "A new family of aspartyl phosphate phosphatases targeting the sporulation transcription factor Spo0A of Bacillus subtilis", MOL MICROB, 42(1), 2001, pp. 133-143
12. Martin, AC; Wadhams, GH; Armitage, JP
    The roles of the multiple CheW and CheA homologues in chemotaxis and in chemoreceptor localization in Rhodobacter sphaeroides
    MOLECULAR MICROBIOLOGY
    
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13. Alley, MRK
    The highly conserved domain of the Caulobacter McpA chemoreceptor is required for its polar localization
    MOLECULAR MICROBIOLOGY
    
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14. Beel, BD; Hazelbauer, GL
    Signalling substitutions in the periplasmic domain of chemoreceptor Trg induce or reduce helical sliding in the transmembrane domain
    MOLECULAR MICROBIOLOGY
    
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15. Martinez-Argudo, I; Martin-Nieto, J; Salinas, P; Maldonado, R; Drummond, M; Contreras, A
    Two-hybrid analysis of domain interactions involving NtrB and NtrC two-component regulators
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16. Singh, T; Arora, DK
    Motility and chemotactic response of Pseudomonas fluorescens toward chemoattractants present in the exudate of Macrophomina phaseolina
    MICROBIOLOGICAL RESEARCH
    
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17. Gouet, P; Chinardet, N; Welch, M; Guillet, V; Cabantous, S; Birck, C; Mourey, L; Samama, JP
    Further insights into the mechanism of function of the response regulator CheY from crystallographic studies of the CheY-CheA(124-257) complex
    ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
    
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18. Vohradsky, J
    Neural network model of gene expression
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19. Wegener, AA; Klare, JP; Engelhard, M; Steinhoff, HJ
    Structural insights into the early steps of receptor-transducer signal transfer in archaeal phototaxis
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20. Martin, CC
    The evolution of perception
    CYBERNETICS AND SYSTEMS
    
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21. Volkman, BF; Lipson, D; Wemmer, DE; Kern, D
    Two-state allosteric behavior in a single-domain signaling protein
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22. Thompson, PR; Cole, PA
    Probing the mechanism of enzymatic phosphoryl transfer with a chemical trick
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23. Cho, H; Wang, WR; Kim, R; Yokota, H; Damo, S; Kim, SH; Wemmer, D; Kustu, S; Yan, DL
    BeF3- acts as a phosphate analog in proteins phosphorylated on aspartate: Structure of a BeF3- complex with phosphoserine phosphatase
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24. Bhaya, D; Takahashi, A; Grossman, AR
    Light regulation of type IV pilus-dependent motility by chemosensor-like elements in Synechocystis PCC6803
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    
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25. Schuster, M; Silversmith, RE; Bourret, RB
    Conformational coupling in the chemotaxis response regulator CheY
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    M. Schuster et al., "Conformational coupling in the chemotaxis response regulator CheY", P NAS US, 98(11), 2001, pp. 6003-6008
26. Moriki, T; Maruyama, H; Maruyama, IN
    Activation of preformed EGF receptor dimers by ligand-induced rotation of the transmembrane domain
    JOURNAL OF MOLECULAR BIOLOGY
    
    T. Moriki et al., "Activation of preformed EGF receptor dimers by ligand-induced rotation of the transmembrane domain", J MOL BIOL, 311(5), 2001, pp. 1011-1026
27. Tuckerman, JR; Gonzalez, G; Gilles-Gonzalez, MA
    Complexation precedes phosphorylation for two-component regulatory system FixL/FixJ of Sinorhizobium meliloti
    JOURNAL OF MOLECULAR BIOLOGY
    
    J.R. Tuckerman et al., "Complexation precedes phosphorylation for two-component regulatory system FixL/FixJ of Sinorhizobium meliloti", J MOL BIOL, 308(3), 2001, pp. 449-455
28. Hughes, CA; Mandell, JG; Anand, GS; Stock, AM; Komives, EA
    Phosphorylation causes subtle changes in solvent accessibility at the interdomain interface of methylesterase CheB
    JOURNAL OF MOLECULAR BIOLOGY
    
    C.A. Hughes et al., "Phosphorylation causes subtle changes in solvent accessibility at the interdomain interface of methylesterase CheB", J MOL BIOL, 307(4), 2001, pp. 967-976
29. Kim, C; Jackson, M; Lux, R; Khan, S
    Determinants of chemotactic signal amplification in Escherichia coli
    JOURNAL OF MOLECULAR BIOLOGY
    
    C. Kim et al., "Determinants of chemotactic signal amplification in Escherichia coli", J MOL BIOL, 307(1), 2001, pp. 119-135
30. Bornhorst, JA; Falke, JJ
    Evidence that both ligand binding and covalent adaptation drive a two-state equilibrium in the aspartate receptor signaling complex
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31. Karatan, E; Saulmon, MM; Bunn, MW; Ordal, GW
    Phosphorylation of the response regulator CheV is required for adaptation to attractants during Bacillus subtilis chemotaxis
    JOURNAL OF BIOLOGICAL CHEMISTRY
    
    E. Karatan et al., "Phosphorylation of the response regulator CheV is required for adaptation to attractants during Bacillus subtilis chemotaxis", J BIOL CHEM, 276(47), 2001, pp. 43618-43626
32. Murphy, OJ; Yi, XH; Weis, RM; Thompson, LK
    Hydrogen exchange reveals a stable and expandable core within the aspartate receptor cytoplasmic domain
    JOURNAL OF BIOLOGICAL CHEMISTRY
    
    O.J. Murphy et al., "Hydrogen exchange reveals a stable and expandable core within the aspartate receptor cytoplasmic domain", J BIOL CHEM, 276(46), 2001, pp. 43262-43269
33. Bjorkman, AM; Dunten, P; Sandgren, MOJ; Dwarakanath, VN; Mowbray, SL
    Mutations that affect ligand binding to the Escherichia coli aspartate receptor - Implications for transmembrane signaling
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34. Simonovic, M; Volz, K
    A distinct meta-active conformation in the 1.1-angstrom resolution structure of wild-type apoCheY
    JOURNAL OF BIOLOGICAL CHEMISTRY
    
    M. Simonovic e K. Volz, "A distinct meta-active conformation in the 1.1-angstrom resolution structure of wild-type apoCheY", J BIOL CHEM, 276(31), 2001, pp. 28637-28640
35. Silversmith, RE; Smith, JG; Guanga, GP; Les, JT; Bourret, RB
    Alteration of a nonconserved active site residue in the chemotaxis response regulator CheY affects phosphorylation and interaction with CheZ
    JOURNAL OF BIOLOGICAL CHEMISTRY
    
    R.E. Silversmith et al., "Alteration of a nonconserved active site residue in the chemotaxis response regulator CheY affects phosphorylation and interaction with CheZ", J BIOL CHEM, 276(21), 2001, pp. 18478-18484
36. Lee, SY; Cho, HS; Pelton, JG; Yan, DL; Berry, EA; Wemmer, DE
    Crystal structure of activated CheY - Comparison with other activated receiver domains
    JOURNAL OF BIOLOGICAL CHEMISTRY
    
    S.Y. Lee et al., "Crystal structure of activated CheY - Comparison with other activated receiver domains", J BIOL CHEM, 276(19), 2001, pp. 16425-16431
37. Martin, AC; Wadhams, GH; Shah, DSH; Porter, SL; Mantotta, JC; Craig, TJ; Verdult, PH; Jones, H; Armitage, JP
    CheR- and CheB-dependent chemosensory adaptation system of Rhodobacter sphaeroides
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38. Jung, KH; Spudich, EN; Trivedi, VD; Spudich, JL
    An archaeal photosignal-transducing module mediates phototaxis in Escherichia coli
    JOURNAL OF BACTERIOLOGY
    
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39. Beel, BD; Hazelbauer, GL
    Substitutions in the periplasmic domain of low-abundance chemoreceptor Trgthat induce or reduce transmembrane signaling: Kinase activation and context effects
    JOURNAL OF BACTERIOLOGY
    
    B.D. Beel e G.L. Hazelbauer, "Substitutions in the periplasmic domain of low-abundance chemoreceptor Trgthat induce or reduce transmembrane signaling: Kinase activation and context effects", J BACT, 183(2), 2001, pp. 671-679
40. Alexandre, G; Zhulin, IB
    More than one way to sense chemicals
    JOURNAL OF BACTERIOLOGY
    
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41. Smulski, DR; Huang, LXL; McCluskey, MP; Reeve, MJG; Vollmer, AC; Van Dyk, TK; LaRossa, RA
    Combined, functional genomic-biochemical approach to intermediary metabolism: Interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
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    D.R. Smulski et al., "Combined, functional genomic-biochemical approach to intermediary metabolism: Interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12", J BACT, 183(11), 2001, pp. 3353-3364
42. Wright, JS; Kadner, RJ
    The phosphoryl transfer domain of UhpB interacts with the response regulator UhpA
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43. Hubschmann, T; Jorissen, HJMM; Borner, T; Gartner, W; de Marsac, NT
    Phosphorylation of proteins in the light-dependent signalling pathway of afilamentous cyanobacterium
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44. Almogy, G; Stone, L; Ben-Tal, N
    Multi-stage regulation, a key to reliable adaptive biochemical pathways
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45. Yang, CS; Spudich, JL
    Light-induced structural changes occur in the transmembrane helices of theNatronobacterium pharaonis HtrII transducer
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46. Hirschman, A; Boukhvalova, M; VanBruggen, R; Wolfe, AJ; Stewart, RC
    Active site mutations in CheA, the signal-transducing protein kinase of the chemotaxis system in Escherichia coli
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47. Saxl, RL; Anand, GS; Stock, AM
    Synthesis and biochemical characterization of a phosphorylated analogue ofthe response regulator CheB
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48. Rodgers, KR; Tang, L; Lukat-Rodgers, GS; Wengenack, NL
    Insights into the signal transduction mechanism of RmFixL provided by carbon monoxide recombination kinetics
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49. Selengut, JD
    MDP-1 is a new and distinct member of the haloacid dehalogenase family of aspartate-dependent phosphohydrolases
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50. Yamada, K; Senju, S; Nakatsura, T; Murata, Y; Ishihara, M; Nakamura, S; Ohno, S; Negi, A; Nishimura, Y
    Identification of a novel autoantigen UACA in patients with panuveitis
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
    
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51. Asthagiri, AR; Lauffenburger, DA
    Bioengineering models of cell signaling
    ANNUAL REVIEW OF BIOMEDICAL ENGINEERING
    
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52. Manson, MD; Cantwell, BJ
    Model is as model does
    NATURE CELL BIOLOGY
    
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53. Cheung, JK; Rood, JI
    Glutamate residues in the putative transmembrane region are required for the function of the VirS sensor histidine kinase from Clostridium perfringens
    MICROBIOLOGY-UK
    
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54. Gestwicki, JE; Strong, LE; Kiessling, LL
    Tuning chemotactic responses with synthetic multivalent ligands
    CHEMISTRY & BIOLOGY
    
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55. Robinson, VL; Buckler, DR; Stock, AM
    A tale of two components: a novel kinase and a regulatory switch
    NATURE STRUCTURAL BIOLOGY
    
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56. Zapf, J; Sen, U; Madhusudan; Hoch, JA; Varughese, KI
    A transient interaction between two phosphorelay proteins trapped in a crystal lattice reveals the mechanism of molecular recognition and phosphotransfer in signal transduction
    STRUCTURE WITH FOLDING & DESIGN
    
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57. Anand, GS; Goudreau, PN; Lewis, JK; Stock, AM
    Evidence for phosphorylation-dependent conformational changes in methylesterase CheB
    PROTEIN SCIENCE
    
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58. Stock, J; Da Re, S
    Signal transduction: Response regulators on and off
    CURRENT BIOLOGY
    
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59. Ward, MJ; Lew, H; Zusman, DR
    Social motility in Myxococcus xanthus requires FrzS, a protein with an extensive coiled-coil domain
    MOLECULAR MICROBIOLOGY
    
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60. Wadhams, GH; Martin, AC; Armitage, JP
    Identification and localization of a methyl-accepting chemotaxis protein in Rhodobacter sphaeroides
    MOLECULAR MICROBIOLOGY
    
    G.H. Wadhams et al., "Identification and localization of a methyl-accepting chemotaxis protein in Rhodobacter sphaeroides", MOL MICROB, 36(6), 2000, pp. 1222-1233
61. Shiomi, D; Okumura, H; Homma, M; Kawagishi, I
    The aspartate chemoreceptor Tar is effectively methylated by binding to the methyltransferase mainly through hydrophobic interaction
    MOLECULAR MICROBIOLOGY
    
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62. Correa, NE; Lauriano, CM; McGee, R; Klose, KE
    Phosphorylation of the flagellar regulatory protein FlrC is necessary for Vibrio cholerae motility and enhanced colonization
    MOLECULAR MICROBIOLOGY
    
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63. Kirby, JR; Niewold, TB; Maloy, S; Ordal, GW
    CheB is required for behavioural responses to negative stimuli during chemotaxis in Bacillus subtilis
    MOLECULAR MICROBIOLOGY
    
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64. Rigden, DJ; Mello, LV; Bertioli, DJ
    Structural modeling of a plant disease resistance gene product domain
    PROTEINS-STRUCTURE FUNCTION AND GENETICS
    
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65. Painter, KJ; Maini, PK; Othmer, HG
    Development and applications of a model for cellular response to multiple chemotactic cues
    JOURNAL OF MATHEMATICAL BIOLOGY
    
    K.J. Painter et al., "Development and applications of a model for cellular response to multiple chemotactic cues", J MATH BIOL, 41(4), 2000, pp. 285-314
66. Tomita, M; Hashimoto, K; Takahashi, K; Matsuzaki, Y; Matsushima, R; Saito, K; Yugi, K; Miyoshi, F; Nakano, H; Tanida, S; Saito, Y; Kawase, A; Watanabe, N; Shimizu, TS; Nakayama, Y
    The E-CELL project: Towards integrative simulation of cellular processes
    NEW GENERATION COMPUTING
    
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67. Wagner, PD; Vu, ND
    Histidine to aspartate phosphotransferase activity of nm23 proteins: phosphorylation of aldolase C on Asp-319
    BIOCHEMICAL JOURNAL
    
    P.D. Wagner e N.D. Vu, "Histidine to aspartate phosphotransferase activity of nm23 proteins: phosphorylation of aldolase C on Asp-319", BIOCHEM J, 346, 2000, pp. 623-630
68. Packer, HL; Armitage, JP
    Behavioral responses of Rhodobacter sphaeroides to linear gradients of thenutrients succinate and acetate
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY
    
    H.L. Packer e J.P. Armitage, "Behavioral responses of Rhodobacter sphaeroides to linear gradients of thenutrients succinate and acetate", APPL ENVIR, 66(12), 2000, pp. 5186-5191
69. Li, GY; Weis, RM
    Covalent modification regulates ligand binding to receptor complexes in the chemosensory system of Escherichia coli
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70. Bearon, RN; Pedley, TJ
    Modelling run-and-tumble chemotaxis in a shear flow
    BULLETIN OF MATHEMATICAL BIOLOGY
    
    R.N. Bearon e T.J. Pedley, "Modelling run-and-tumble chemotaxis in a shear flow", B MATH BIOL, 62(4), 2000, pp. 775-791
71. Dung, L
    Coexistence with chemotaxis
    SIAM JOURNAL ON MATHEMATICAL ANALYSIS
    
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72. Yoshihara, S; Suzuki, F; Fujita, H; Geng, XX; Ikeuchi, M
    Novel putative photoreceptor and regulatory genes required for the positive phototactic movement of the unicellular motile cyanobacterium Synechocystis sp PCC 6803
    PLANT AND CELL PHYSIOLOGY
    
    S. Yoshihara et al., "Novel putative photoreceptor and regulatory genes required for the positive phototactic movement of the unicellular motile cyanobacterium Synechocystis sp PCC 6803", PLANT CEL P, 41(12), 2000, pp. 1299-1304
73. Kearns, DB; Campbell, BD; Shimkets, LJ
    Myxococcus xanthus fibril appendages are essential for excitation by a phospholipid attractant
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    
    D.B. Kearns et al., "Myxococcus xanthus fibril appendages are essential for excitation by a phospholipid attractant", P NAS US, 97(21), 2000, pp. 11505-11510
74. Lybarger, SR; Maddock, JR
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