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La ricerca find articoli where soggetti phrase all words 'ALANINE-BASED PEPTIDES' sort by level,fasc_key/DESCEND, pagina_ini_num/ASCEND ha restituito 161 riferimenti
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    1. Mahadevan, J; Lee, KH; Kuczera, K
      Conformational free energy surfaces of Ala(10) and Aib(10) peptide helicesin solution

      JOURNAL OF PHYSICAL CHEMISTRY B
    2. Cui, Q; Elstner, M; Kaxiras, E; Frauenheim, T; Karplus, M
      A QM/MM implementation of the self-consistent charge density functional tight binding (SCC-DFTB) method

      JOURNAL OF PHYSICAL CHEMISTRY B
    3. Kaleta, DT; Jarrold, MF
      Disrupting helix formation in unsolvated peptides

      JOURNAL OF PHYSICAL CHEMISTRY B
    4. Zou, J; Kajita, K; Sugimoto, N
      Cu2+ inhibits the aggregation of amyloid beta-peptide(1-42) in vitro

      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
    5. Hammarstrom, LGJ; Gauthier, TJ; Hammer, RP; McLaughlin, ML
      Amphipathic control of the 3(10)-/alpha-helix equilibrium in synthetic peptides

      JOURNAL OF PEPTIDE RESEARCH
    6. Taraszka, JA; Counterman, AE; Clemmer, DE
      Large anhydrous polyalanine ions: substitution of Na+ for H+ destabilizes folded states

      INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
    7. Jaravine, VA; Alexandrescu, AT; Grzesiek, S
      Observation of the closing of individual hydrogen bonds during TFE-inducedhelix formation in a peptide

      PROTEIN SCIENCE
    8. Cochran, DAE; Penel, S; Doig, AJ
      Effect of the N1 residue on the stability of the alpha-helix for all 20 amino acids

      PROTEIN SCIENCE
    9. Andrew, CD; Penel, S; Jones, GR; Doig, AJ
      Stabilizing nonpolar/polar side-chain interactions in the alpha-helix

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    10. Smith, AV; Hall, CK
      alpha-helix formation: Discontinuous molecular dynamics on an intermediate-resolution protein model

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    11. Smith, AV; Hall, CK
      Assembly of a tetrameric alpha-helical bundle: Computer simulations on an intermediate-resolution protein model

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    12. Olson, CA; Spek, EJ; Shi, ZS; Vologodskii, A; Kallenbach, NR
      Cooperative helix stabilization by complex Arg-Glu salt bridges

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    13. Shea, JE; Brooks, CL
      From folding theories to folding proteins: A review and assessment of simulation studies of protein folding and unfolding

      ANNUAL REVIEW OF PHYSICAL CHEMISTRY
    14. Levy, Y; Jortner, J; Becker, OM
      Solvent effects on the energy landscapes and folding kinetics of polyalanine

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    15. Lewis, RNAH; Zhang, YP; Hodges, RS; Subczynski, WK; Kusumi, A; Flach, CR; Mendelsohn, R; McElhaney, RN
      A polyalanine-based peptide cannot form a stable transmembrane alpha-helixin fully hydrated phospholipid bilayers

      BIOCHEMISTRY
    16. Miller, JS; Kennedy, RJ; Kemp, DS
      Short, solubilized polyalanines are conformational chameleons: Exceptionally helical if N- and C-capped with helix stabilizers, weakly to moderately helical if capped with rigid spacers

      BIOCHEMISTRY
    17. Counterman, AE; Clemmer, DE
      Large anhydrous polyalanine ions: Evidence for extended helices and onset of a more compact state

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    18. Kubelka, J; Keiderling, TA
      Differentiation of beta-sheet-forming structures: Ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein beta-sheets

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    19. Topol, IA; Burt, SK; Deretey, E; Tang, TH; Perczel, A; Rashin, A; Csizmadia, IG
      alpha- and 3(10)-helix interconversion: A quantum-chemical study on polyalanine systems in the gas phase and in aqueous solvent

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    20. Improta, R; Barone, V; Kudin, KN; Scuseria, GE
      Structure and conformational behavior of biopolymers by density functionalcalculations employing periodic boundary conditions. I. The case of polyglycine, polyalanine, and poly-alpha-aminoisobutyric acid in vacuo

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    21. Wu, XW; Wang, SM
      Folding studies of a linear pentamer peptide adopting a reverse turn conformation in aqueous solution through molecular dynamics simulation

      JOURNAL OF PHYSICAL CHEMISTRY B
    22. Ferrara, P; Apostolakis, J; Caflisch, A
      Thermodynamics and kinetics of folding of two model peptides investigated by molecular dynamics simulations

      JOURNAL OF PHYSICAL CHEMISTRY B
    23. Thompson, PA; Munoz, V; Jas, GS; Henry, ER; Eaton, WA; Hofrichter, J
      The helix-coil kinetics of a heteropeptide

      JOURNAL OF PHYSICAL CHEMISTRY B
    24. Krittanai, C; Johnson, WC
      The relative order of helical propensity of amino acids changes with solvent environment

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    25. Elstner, M; Jalkanen, KJ; Knapp-Mohammady, M; Frauenheim, T; Suhai, S
      DFT studies on helix formation in N-acetyl-(L-alanyl)(n)-N '-methylamide for n=1-20

      CHEMICAL PHYSICS
    26. Mayer, B; Klein, CT
      Influence of solvation on the helix-forming tendency of nonpolar amino acids

      JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM
    27. Jarrold, MF
      Peptides and proteins in the vapor phase

      ANNUAL REVIEW OF PHYSICAL CHEMISTRY
    28. Serrano, L
      The relationship between sequence and structure in elementary folding units

      ADVANCES IN PROTEIN CHEMISTRY, VOL 53
    29. Avbelj, F; Luo, PZ; Baldwin, RL
      Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    30. Mitsutake, A; Okamoto, Y
      Helix-coil transitions of amino-acid homo-oligomers in aqueous solution studied by multicanonical simulations

      JOURNAL OF CHEMICAL PHYSICS
    31. Han, WG; Elstner, M; Jalkanen, KJ; Frauenheim, T; Suhai, S
      Hybrid SCC-DFTB/molecular mechanical studies of H-bonded systems and of N-acetyl-(L-Ala)(n) N '-methylamide helices in water solution

      INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY
    32. Arai, T; Imachi, T; Kato, T; Nishino, N
      The conformation of de novo designed amphiphilic peptides with six or nineL-2-(2,2,2-trifluoroethyl)glycines as the hydrophobic amino acid

      BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN
    33. Sugimoto, N
      DNA recognition of a 24-mer peptide derived from RecA protein

      BIOPOLYMERS
    34. McNulty, JC; Silapie, JL; Carnevali, M; Farrar, CT; Griffin, RG; Formaggio, F; Crisma, M; Toniolo, C; Milhauser, GL
      Electron spin resonance of TOAC labeled peptides: Folding transitions and high frequency spectroscopy

      BIOPOLYMERS
    35. Blondelle, SE; Lohner, K
      Combinatorial libraries: A tool to design antimicrobial and antifungal peptide analogues having lyric specificities for structure-activity relationship studies

      BIOPOLYMERS
    36. Decatur, SM
      IR spectroscopy of isotope-labeled helical peptides: Probing the effect ofN-acetylation on helix stability

      BIOPOLYMERS
    37. Lee, KH; Benson, DR; Kuczera, K
      Transitions from alpha to pi helix observed in molecular dynamics simulations of synthetic peptides

      BIOCHEMISTRY
    38. Kohtani, M; Kinnear, BS; Jarrold, MF
      Metal-ion enhanced helicity in the gas phase

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    39. Kinnear, BS; Kaleta, DT; Kohtani, M; Hudgins, RR; Jarrold, MF
      Conformations of unsolvated valine-based peptides

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    40. Krause, E; Bienert, M; Schmieder, P; Wenschuh, H
      The helix-destabilizing propensity scale of D-amino acids: The influence of side chain steric effects

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    41. Milov, AD; Tsvetkov, YD; Formaggio, F; Crisma, M; Toniolo, C; Raap, J
      Self-assembling properties of membrane-modifying peptides studied by PELDOR and CW-ESR spectroscopies

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    42. Wallimann, P; Kennedy, RJ; Kemp, DS
      Large circular dichroism ellipticities for N-templated helical polypeptides are inconsistent with currently accepted helicity algorithms

      ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
    43. Bennati, M; Gerfen, GJ; Martinez, GV; Griffin, RG; Singel, DJ; Millhauser, GL
      Nitroxide side-chain dynamics in a spin-labeled helix-forming peptide revealed by high-frequency (139.5-GHz) EPR spectroscopy

      JOURNAL OF MAGNETIC RESONANCE
    44. Kaul, R; Balaram, P
      Stereochemical control of peptide folding

      BIOORGANIC & MEDICINAL CHEMISTRY
    45. Monaco, V; Formaggio, F; Crisma, M; Toniolo, C; Hanson, P; Millhauser, G; George, C; Deschamps, JR; Flippen-Anderson, JL
      Determining the occurrence of a 3(10)-helix and an alpha-helix in two different segments of a lipopeptaibol antibiotic using TOAC, a nitroxide spin-labeled C-alpha-tetrasubstituted alpha-amino acid

      BIOORGANIC & MEDICINAL CHEMISTRY
    46. Padmanabhan, S; Jimenez, MA; Rico, M
      Folding propensities of synthetic peptide fragments covering the entire sequence of phage 434 Cro protein

      PROTEIN SCIENCE
    47. Kosky, AA; Razzaq, UO; Treuheit, MJ; Brems, DN
      The effects of alpha-helix on the stability of Asn residues: Deamidation rates in peptides of varying helicity

      PROTEIN SCIENCE
    48. Strong, AE; Moore, BD
      Self-assembling monolayers of helical oligopeptides on gold with applications in molecular electronics

      JOURNAL OF MATERIALS CHEMISTRY
    49. Chipot, C; Maigret, B; Pohorille, A
      Early events in the folding of an amphipathic peptide: A multinanosecond molecular dynamics study

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    50. Huo, SH; Straub, JE
      Direct computation of long time processes in peptides and proteins: Reaction path study of the coil-to-helix transition in polyalanine

      PROTEINS-STRUCTURE FUNCTION AND GENETICS
    51. Sugimoto, N; Zou, J; Kazuta, H; Miyoshi, D
      alpha-beta structural transition of short oligopeptides by water/organic solvent titration

      CHEMISTRY LETTERS
    52. Andrews, MJI; Tabor, AB
      Forming stable helical peptides using natural and artificial amino acids

      TETRAHEDRON
    53. Leon, S; Zanuy, D; Aleman, C; Munoz-Guerra, S
      Conformational analysis of the 13/4 to 4/1 helical transition in poly(alpha-isobutyl beta-L-aspartate)

      POLYMER
    54. Luo, PZ; Baldwin, RL
      Interaction between water and polar groups of the helix backbone: An important determinant of helix propensities

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    55. Siedlecka, M; Goch, G; Ejchart, A; Sticht, H; Bierzynski, A
      alpha-helix nucleation by a calcium-binding peptide loop

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
    56. Maroun, RG; Krebs, D; El Antri, S; Deroussent, A; Lescot, E; Troalen, F; Porumb, H; Goldberg, ME; Fermandjian, S
      Self-association and domains of interactions of an amphipathic helix peptide inhibitor of HIV-1 integrase assessed by analytical ultracentrifugation and NMR experiments in trifluoroethanol/H2O mixtures

      JOURNAL OF BIOLOGICAL CHEMISTRY
    57. Barbosa, SR; Cilli, EM; Lamy-Freund, MT; Castrucci, AML; Nakaie, CR
      First synthesis of a fully active spin-labeled peptide hormone

      FEBS LETTERS
    58. Cieplak, AS
      Inductive and resonance effects of substituents on pi-face selection

      CHEMICAL REVIEWS
    59. Monaco, V; Formaggio, F; Crisma, M; Toniolo, C; Hanson, P; Millhauser, GL
      Orientation and immersion depth of a helical lipopeptaibol in membranes using TOAC as an ESR probe

      BIOPOLYMERS
    60. Trulson, JA; Millhauser, GL
      The effect of mutations on peptide models of the DNA binding helix of p53:Evidence for a correlation between structure and tumorigenesis

      BIOPOLYMERS
    61. Sung, SS
      Monte Carlo simulations of beta-hairpin folding at constant temperature

      BIOPHYSICAL JOURNAL
    62. Hong, J; Oren, Z; Shai, Y
      Structure and organization of hemolytic and nonhemolytic diastereomers of antimicrobial peptides in membranes

      BIOCHEMISTRY
    63. Richardson, JM; McMahon, KW; MacDonald, CC; Makhatadze, GI
      MEARA sequence repeat of human CstF-64 polyadenylation factor is helical in solution. A spectroscopic and calorimetric study

      BIOCHEMISTRY
    64. Decatur, SM; Antonic, J
      Isotope-edited infrared spectroscopy of helical peptides

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    65. Takano, M; Yamato, T; Higo, J; Suyama, A; Nagayama, K
      Molecular dynamics of a 15-residue poly(L-alanine) in water: Helix formation and energetics

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    66. Prince, RB; Saven, JG; Wolynes, PG; Moore, JS
      Cooperative conformational transitions in phenylene ethynylene oligomers: Chain-length dependence

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    67. Dadlez, M
      Folding initiation sites and protein folding

      ACTA BIOCHIMICA POLONICA
    68. Bolin, KA; Millhauser, GL
      alpha and 3(10): The split personality of polypeptide helices

      ACCOUNTS OF CHEMICAL RESEARCH
    69. SUN JK; DOIG AJ
      ADDITION OF SIDE-CHAIN INTERACTIONS TO 3(10)-HELIX COIL AND ALPHA-HELIX/3(10)-HELIX/COIL THEORY/

      Protein science
    70. Toropov, YV; Dzuba, SA; Tsvetkov, YD; Monaco, V; Formaggio, F; Crisma, M; Toniolo, C; Raap, J
      Molecular dynamics and spatial distribution of TOAC spin-labelled peptaibols studied in glassy liquid by echo-detected EPR spectroscopy

      APPLIED MAGNETIC RESONANCE
    71. BERTSCH RA; VAIDEHI N; CHAN SI; GODDARD WA
      KINETIC STEPS FOR ALPHA-HELIX FORMATION

      Proteins
    72. RUSSELL CJ; KING DS; THORGEIRSSON TE; SHIN YK
      DE-NOVO DESIGN OF A PEPTIDE WHICH PARTITIONS BETWEEN WATER AND PHOSPHOLIPID-BILAYERS AS A MONOMERIC ALPHA-HELIX

      Protein engineering (Print)
    73. LACROIX E; VIGUERA AR; SERRANO L
      ELUCIDATING THE FOLDING PROBLEM OF ALPHA-HELICES - LOCAL MOTIFS, LONG-RANGE ELECTROSTATICS, IONIC-STRENGTH DEPENDENCE AND PREDICTION OF NMRPARAMETERS

      Journal of Molecular Biology
    74. KOHN WD; KAY CM; HODGES RS
      ORIENTATION, POSITIONAL, ADDITIVITY, AND OLIGOMERIZATION-STATE EFFECTS OF INTERHELICAL ION-PAIRS IN ALPHA-HELICAL COILED-COILS

      Journal of Molecular Biology
    75. AVBELJ F; FELE L
      ROLE OF MAIN-CHAIN ELECTROSTATICS, HYDROPHOBIC EFFECT AND SIDE-CHAIN CONFORMATIONAL ENTROPY IN DETERMINING THE SECONDARY STRUCTURE OF PROTEINS

      Journal of Molecular Biology
    76. Samuelson, SO; Martyna, GJ
      Two dimensional umbrella sampling techniques for the computer simulation study of helical peptides at thermal equilibrium: The 3K(I) peptide in vacuoand solution

      JOURNAL OF CHEMICAL PHYSICS
    77. CHANG CF; ZEHFUS MH
      EFFECTS OF BACKBONE MODIFICATION ON HELICAL PEPTIDES - THE REDUCED CARBONYL MODIFICATION

      Biopolymers
    78. Vila, JA; Ripoll, DR; Villegas, ME; Vorobjev, YN; Scheraga, HA
      Role of hydrophobicity and solvent-mediated charge-charge interactions in stabilizing alpha-helices

      BIOPHYSICAL JOURNAL
    79. SMITH JS; SCHOLTZ JM
      ENERGETICS OF POLAR SIDE-CHAIN INTERACTIONS IN HELICAL PEPTIDES - SALT EFFECTS ON ION-PAIRS AND HYDROGEN-BONDS

      Biochemistry
    80. CHIPOT C; POHORILLE A
      FOLDING AND TRANSLOCATION OF THE UNDECAMER OF POLY-L-LEUCINE ACROSS THE WATER-HEXANE INTERFACE - A MOLECULAR-DYNAMICS STUDY

      Journal of the American Chemical Society
    81. WILLIAMS L; KATHER K; KEMP DS
      HIGH HELICITIES OF LYS-CONTAINING, ALA-RICH PEPTIDES ARE PRIMARILY ATTRIBUTABLE TO A LARGE, CONTEXT-DEPENDENT LYS STABILIZATION

      Journal of the American Chemical Society
    82. MOYESHERMAN D; JIN S; HAM I; LIM DY; SCHOLTZ JM; BURGESS K
      CONFORMATIONAL PREFERENCES OF RNASE A C-PEPTIDE DERIVATIVES CONTAINING A HIGHLY CONSTRAINED ANALOG OF PHENYLALANINE

      Journal of the American Chemical Society
    83. LONG HW; TYCKO R
      BIOPOLYMER CONFORMATIONAL DISTRIBUTIONS FROM SOLID-STATE NMR - ALPHA-HELIX AND 3(10)-HELIX CONTENTS OF A HELICAL PEPTIDE

      Journal of the American Chemical Society
    84. Hudgins, RR; Ratner, MA; Jarrold, MF
      Design of helices that are stable in vacuo

      JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
    85. BOLIN KA; HANSON P; WRIGHT SJ; MILLHAUSER GL
      AN NMR INVESTIGATION OF THE CONFORMATIONAL EFFECT OF NITROXIDE SPIN LABELS ON ALA-RICH HELICAL PEPTIDES

      Journal of magnetic resonance [1997]
    86. ALEMAN C
      CONFORMATIONAL PROPERTIES OF ALPHA-AMINO-ACIDS DISUBSTITUTED AT THE ALPHA-CARBON

      JOURNAL OF PHYSICAL CHEMISTRY B
    87. DATTA S; SHAMALA N; BANERJEE A; BALARAM P
      HYDROGEN-BONDING IN PEPTIDE HELICES - ANALYSIS OF 2 INDEPENDENT HELICES IN THE CRYSTAL-STRUCTURE OF A PEPTIDE BOC-VAL-ALA-LEU-AIB-VAL-ALA-PHE-OME

      The journal of peptide research
    88. ANDERSEN NH; TONG H
      EMPIRICAL PARAMETERIZATION OF A MODEL FOR PREDICTING PEPTIDE HELIX COIL EQUILIBRIUM POPULATIONS/

      Protein science
    89. YANG JX; SPEK EJ; GONG YX; ZHOU HX; KALLENBACH NR
      THE ROLE OF CONTEXT ON ALPHA-HELIX STABILIZATION - HOST-GUEST ANALYSIS IN A MIXED BACKGROUND PEPTIDE MODEL

      Protein science
    90. CORVAJA C; DEMARCHI M; TOFFOLETTI A
      CONFORMATIONAL DYNAMICS OF TRIRADICAL NITROXIDES AS STUDIED BY EPR

      Applied magnetic resonance
    91. ALEMAN C
      CHAIN CONFORMATION IN POLYRETROPEPTIDES .3. DESIGN OF A 3(10) HELIX USING ALPHA,ALPHA-DIALKYLATED AMINO-ACIDS AND RETROPEPTIDE BONDS

      Proteins
    92. SHALONGO W; STELLWAGEN E
      DICHROIC STATISTICAL-MODEL FOR PREDICTION AND ANALYSIS OF PEPTIDE HELICITY

      Proteins
    93. KOJIMA S; KURIKI Y; YOSHIDA T; YAZAKI K; MIURA K
      FIBRIL FORMATION BY AN AMPHIPATHIC ALPHA-HELIX-FORMING POLYPEPTIDE PRODUCED BY GENE ENGINEERING

      Proceedings of the Japan Academy. Series B Physical and biological sciences
    94. PELLEGRINI M; GRONBECHJENSEN N; DONIACH S
      SIMULATIONS OF THE THERMODYNAMIC PROPERTIES OF A SHORT POLYALANINE PEPTIDE USING POTENTIALS OF MEAN FORCE

      Physica. A
    95. BANERJEE A; RAGHOTHAMA S; BALARAM P
      PEPTIDE DESIGN - HELIX-HELIX MOTIFS IN SYNTHETIC SEQUENCES

      Perkin transactions. 2
    96. TAMM LK; TATULIAN SA
      INFRARED-SPECTROSCOPY OF PROTEINS AND PEPTIDES IN LIPID BILAYERS

      Quarterly Reviews of Biophysics
    97. STAPLEY BJ; DOIG AJ
      HYDROGEN-BONDING INTERACTIONS BETWEEN GLUTAMINE AND ASPARAGINE IN ALPHA-HELICAL PEPTIDES

      Journal of Molecular Biology
    98. KUHLMAN B; YANG HY; BOICE JA; FAIRMAN R; RALEIGH DP
      AN EXCEPTIONALLY STABLE HELIX FROM THE RIBOSOMAL-PROTEIN L9 - IMPLICATIONS FOR PROTEIN-FOLDING AND STABILITY

      Journal of Molecular Biology
    99. MILLHAUSER GL; STENLAND CJ; HANSON P; BOLIN KA; VANDEVEN FJM
      ESTIMATING THE RELATIVE POPULATIONS OF 3(10)-HELIX AND ALPHA-HELIX INALA-RICH PEPTIDES - A HYDROGEN-EXCHANGE AND HIGH-FIELD NMR-STUDY

      Journal of Molecular Biology
    100. AURORA R; CREAMER TP; SRINIVASAN R; ROSE GD
      LOCAL INTERACTIONS IN PROTEIN-FOLDING - LESSONS FROM THE ALPHA-HELIX

      The Journal of biological chemistry


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Documento generato il 11/08/20 alle ore 00:43:05