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1. Moch, H; Kononen, J; Kallioniemi, OP; Sauter, G
   Tissue microarrays: What will they bring to molecular and anatomic pathology?
   ADVANCES IN ANATOMIC PATHOLOGY
   
   H. Moch et al., "Tissue microarrays: What will they bring to molecular and anatomic pathology?", ADV ANAT PA, 8(1), 2001, pp. 14-20
2. Kallioniemi, OP; Wagner, U; Kononen, J; Sauter, G
   Tissue microarray technology for high-throughput molecular profiling of cancer
   HUMAN MOLECULAR GENETICS
   
   O.P. Kallioniemi et al., "Tissue microarray technology for high-throughput molecular profiling of cancer", HUM MOL GEN, 10(7), 2001, pp. 657-662
3. Forus, A; D'Angelo, A; Henriksen, J; Merla, G; Maelandsmo, GM; Florenes, VA; Olivieri, S; Bjerkehagen, B; Meza-Zepeda, LA; Blanco, FD; Muller, C; Sanvito, F; Kononen, J; Nesland, JM; Fodstad, O; Reymond, A; Kallioniemi, OP; Arrigoni, G; Ballabio, A; Myklebost, O; Zollo, M
   Amplification and overexpression of PRUNE in human sarcomas and breast carcinomas - a possible mechanism for altering the nm23-H1 activity
   ONCOGENE
   
   A. Forus et al., "Amplification and overexpression of PRUNE in human sarcomas and breast carcinomas - a possible mechanism for altering the nm23-H1 activity", ONCOGENE, 20(47), 2001, pp. 6881-6890
4. Heiskanen, M; Kononen, J; Barlund, M; Torhorst, J; Sauter, G; Kallioniemi, A; Kallioniemi, O
   CGH, cDNA and tissue microarray analyses implicate FGFR2 amplification in a small subset of breast tumors
   ANALYTICAL CELLULAR PATHOLOGY
   
   M. Heiskanen et al., "CGH, cDNA and tissue microarray analyses implicate FGFR2 amplification in a small subset of breast tumors", ANAL CELL P, 22(4), 2001, pp. 229-234
5. Srivastava, M; Bubendorf, L; Srikantan, V; Fossom, L; Nolan, L; Glasman, M; Leighton, X; Fehrle, W; Pittaluga, S; Raffeld, M; Koivisto, P; Willi, N; Gasser, TC; Kononen, J; Sauter, G; Kallioniemi, OP; Srivastava, S; Pollard, HB
   ANX7, a candidate tumor suppressor gene for prostate cancer
   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
   
   M. Srivastava et al., "ANX7, a candidate tumor suppressor gene for prostate cancer", P NAS US, 98(8), 2001, pp. 4575-4580
6. Monni, O; Barlund, M; Mousses, S; Kononen, J; Sauter, G; Heiskanen, M; Paavola, P; Avela, K; Chen, YD; Bittner, ML; Kallioniemi, A
   Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer
   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
   
   O. Monni et al., "Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer", P NAS US, 98(10), 2001, pp. 5711-5716
7. Nocito, A; Bubendorf, L; Tinner, EM; Suess, K; Wagner, U; Forster, T; Kononen, J; Fijan, A; Bruderer, J; Schmid, U; Ackermann, D; Maurer, R; Alund, G; Knonagel, H; Rist, M; Anabitarte, M; Hering, F; Hardmeier, T; Schoenenberger, AJ; Flury, R; Jager, P; Fehr, JL; Schraml, P; Moch, H; Mihatsch, MJ; Gasser, T; Sauter, G
   Microarrays of bladder cancer tissue are highly representative of proliferation index and histological grade
   JOURNAL OF PATHOLOGY
   
   A. Nocito et al., "Microarrays of bladder cancer tissue are highly representative of proliferation index and histological grade", J PATHOLOGY, 194(3), 2001, pp. 349-357
8. Nocito, A; Kononen, J; Kallioniemi, OP; Sauter, G
   Tissue microarrays (TMAs) for high-throughput molecular pathology research
   INTERNATIONAL JOURNAL OF CANCER
   
   A. Nocito et al., "Tissue microarrays (TMAs) for high-throughput molecular pathology research", INT J CANC, 94(1), 2001, pp. 1-5
9. Torhorst, J; Bucher, C; Kononen, J; Haas, P; Zuber, M; Kochli, OR; Mross, F; Dieterich, H; Moch, H; Mihatsch, M; Kallioniemi, OP; Sauter, G
   Tissue microarrays for rapid linking of molecular changes to clinical endpoints
   AMERICAN JOURNAL OF PATHOLOGY
   
   J. Torhorst et al., "Tissue microarrays for rapid linking of molecular changes to clinical endpoints", AM J PATH, 159(6), 2001, pp. 2249-2256
10. Schraml, P; Struckmann, K; Bednar, R; Fu, WT; Gasser, T; Wilber, K; Kononen, J; Sauter, G; Mihatsch, MJ; Moch, H
    CDKN2A mutation analysis, protein expression, and deletion mapping of chromosome 9p in conventional clear-cell renal carcinomas - Evidence for a second tumor suppressor gene proximal to CDKN2A
    AMERICAN JOURNAL OF PATHOLOGY
    
    P. Schraml et al., "CDKN2A mutation analysis, protein expression, and deletion mapping of chromosome 9p in conventional clear-cell renal carcinomas - Evidence for a second tumor suppressor gene proximal to CDKN2A", AM J PATH, 158(2), 2001, pp. 593-601
11. Simon, R; Nocito, A; Hubscher, T; Bucher, C; Torhorst, J; Schraml, P; Bubendorf, L; Mihatsch, MM; Moch, H; Wilber, K; Schotzau, A; Kononen, J; Sauter, G
    Patterns of HER-2/neu amplification and overexpression in primary and metastatic breast cancer
    JOURNAL OF THE NATIONAL CANCER INSTITUTE
    
    R. Simon et al., "Patterns of HER-2/neu amplification and overexpression in primary and metastatic breast cancer", J NAT CANC, 93(15), 2001, pp. 1141-1146
12. Paunu, N; Sallinen, SL; Karhu, R; Miettinen, H; Sallinen, P; Kononen, J; Laippala, P; Simola, KOJ; Helen, P; Haapasalo, H
    Chromosome imbalances in familial gliomas detected by comparative genomic hybridization
    GENES CHROMOSOMES & CANCER
    
    N. Paunu et al., "Chromosome imbalances in familial gliomas detected by comparative genomic hybridization", GENE CHROM, 29(4), 2000, pp. 339-346
13. Wolf, M; El-Rifai, W; Tarkkanen, M; Kononen, J; Serra, M; Eriksen, EF; Elomaa, I; Kallioniemi, A; Kallioniemi, OP; Knuutila, S
    Novel findings in gene expression detected in human osteosarcoma by cDNA microarray
    CANCER GENETICS AND CYTOGENETICS
    
    M. Wolf et al., "Novel findings in gene expression detected in human osteosarcoma by cDNA microarray", CANC GENET, 123(2), 2000, pp. 128-132
14. Sallinen, SL; Sallinen, PK; Haapasalo, HK; Helin, HJ; Helen, PT; Schraml, P; Kallioniemi, OP; Kononen, J
    Identification of differentially expressed genes in human gliomas by DNA microarray and tissue chip techniques
    CANCER RESEARCH
    
    S.L. Sallinen et al., "Identification of differentially expressed genes in human gliomas by DNA microarray and tissue chip techniques", CANCER RES, 60(23), 2000, pp. 6617-6622
15. Bowen, C; Bubendorf, L; Voeller, HJ; Slack, R; Willi, N; Sauter, G; Gasser, TC; Koivisto, P; Lack, EE; Kononen, J; Kallioniemi, OP; Gelmann, EP
    Loss of NKX3.1 expression in human prostate cancers correlates with tumor progression
    CANCER RESEARCH
    
    C. Bowen et al., "Loss of NKX3.1 expression in human prostate cancers correlates with tumor progression", CANCER RES, 60(21), 2000, pp. 6111-6115
16. Barlund, M; Monni, O; Kononen, J; Cornelison, R; Torhorst, J; Sauter, G; Kallioniemi, OP; Kallioniemi, A
    Multiple genes at 17q23 undergo amplification and overexpression in breastcancer
    CANCER RESEARCH
    
    M. Barlund et al., "Multiple genes at 17q23 undergo amplification and overexpression in breastcancer", CANCER RES, 60(19), 2000, pp. 5340-5344
17. Richter, J; Wagner, U; Kononen, J; Fijan, A; Bruderer, J; Schmid, U; Ackermann, D; Maurer, R; Alund, G; Knonagel, H; Rist, M; Wilber, K; Anabitarte, R; Hering, F; Hardmeier, T; Schonenberger, A; Flury, R; Jager, P; Fehr, JL; Schraml, P; Moch, H; Mihatsch, MJ; Gasser, T; Kallioniemi, OP; Sauter, G
    High-throughput tissue microarray analysis of cyclin E gene amplification and overexpression in urinary bladder cancer
    AMERICAN JOURNAL OF PATHOLOGY
    
    J. Richter et al., "High-throughput tissue microarray analysis of cyclin E gene amplification and overexpression in urinary bladder cancer", AM J PATH, 157(3), 2000, pp. 787-794
18. Barlund, M; Forozan, F; Kononen, J; Bubendorf, L; Chen, YD; Bittner, ML; Torhorst, J; Haas, P; Bucher, C; Sauter, G; Kallioniemi, OP; Kallioniemi, A
    Detecting activation of ribosomal protein S6 kinase by complementary DNA and tissue microarray analysis
    JOURNAL OF THE NATIONAL CANCER INSTITUTE
    
    M. Barlund et al., "Detecting activation of ribosomal protein S6 kinase by complementary DNA and tissue microarray analysis", J NAT CANC, 92(15), 2000, pp. 1252-1259
19. Schraml, P; Kononen, J; Bubendorf, L; Moch, H; Bissig, H; Nocito, A; Mihatsch, MJ; Kallioniemi, OP; Sauter, G
    Tissue microarrays for gene amplification surveys in many different tumor types
    CLINICAL CANCER RESEARCH
    
    P. Schraml et al., "Tissue microarrays for gene amplification surveys in many different tumor types", CLIN CANC R, 5(8), 1999, pp. 1966-1975
20. Miettinen, H; Kononen, J; Sallinen, P; Alho, H; Helen, P; Helin, H; Kalimo, H; Paljarvi, L; Isola, J; Haapasalo, H
    CDKN2/p16 predicts survival in oligodendrogliomas: comparison with astrocytomas
    JOURNAL OF NEURO-ONCOLOGY
    
    H. Miettinen et al., "CDKN2/p16 predicts survival in oligodendrogliomas: comparison with astrocytomas", J NEURO-ONC, 41(3), 1999, pp. 205-211
21. Lee, SK; Anzick, SL; Choi, JE; Bubendorf, L; Guan, XY; Jung, YK; Kallioniemi, OP; Kononen, J; Trent, JM; Azorsa, D; Jhun, BH; Cheong, JH; Lee, YC; Meltzer, PS; Lee, JW
    A nuclear factor, ASC-2, as a cancer-amplified transcriptional coactivatoressential for ligand-dependent transactivation by nuclear receptors in vivo
    JOURNAL OF BIOLOGICAL CHEMISTRY
    
    S.K. Lee et al., "A nuclear factor, ASC-2, as a cancer-amplified transcriptional coactivatoressential for ligand-dependent transactivation by nuclear receptors in vivo", J BIOL CHEM, 274(48), 1999, pp. 34283-34293
22. Bubendorf, L; Kononen, J; Koivisto, P; Schraml, P; Moch, H; Gasser, TC; Willi, N; Mihatsch, MJ; Sauter, G; Kallioniemi, OP
    Survey of gene amplifications during prostate cancer progression by high throughput fluorescence in situ hybridization on tissue microarrays
    CANCER RESEARCH
    
    L. Bubendorf et al., "Survey of gene amplifications during prostate cancer progression by high throughput fluorescence in situ hybridization on tissue microarrays", CANCER RES, 59(4), 1999, pp. 803-806
23. Ingvarsson, S; Agnarsson, BA; Sigbjornsdottir, BI; Kononen, J; Kallioniemi, OP; Barkardottir, RB; Kovatich, AJ; Schwarting, R; Hauck, WW; Huebner, K; McCue, PA
    Reduced Fhit expression in sporadic and BRCA2-linked breast carcinomas
    CANCER RESEARCH
    
    S. Ingvarsson et al., "Reduced Fhit expression in sporadic and BRCA2-linked breast carcinomas", CANCER RES, 59(11), 1999, pp. 2682-2689
24. Moch, H; Schraml, P; Bubendorf, L; Mirlacher, M; Kononen, J; Gasser, T; Mihatsch, MJ; Kallioniemi, OP; Sauter, G
    High-throughput tissue microarray analysis to evaluate genes uncovered by cDNA microarray screening in renal cell carcinoma
    AMERICAN JOURNAL OF PATHOLOGY
    
    H. Moch et al., "High-throughput tissue microarray analysis to evaluate genes uncovered by cDNA microarray screening in renal cell carcinoma", AM J PATH, 154(4), 1999, pp. 981-986
25. Bubendorf, L; Kolmer, M; Kononen, J; Koivisto, P; Mousses, S; Chen, YD; Mahlamaki, E; Schraml, P; Moch, H; Willi, N; Elkahloun, AG; Pretlow, TG; Gasser, TC; Mihatsch, MJ; Sauter, G; Kallioniemi, OP
    Hormone therapy failure in human prostate cancer: Analysis by complementary DNA and issue microarrays
    JOURNAL OF THE NATIONAL CANCER INSTITUTE
    
    L. Bubendorf et al., "Hormone therapy failure in human prostate cancer: Analysis by complementary DNA and issue microarrays", J NAT CANC, 91(20), 1999, pp. 1758-1764
26. KONONEN J; BUBENDORF L; KALLIONIEMI A; BARLUND M; SCHRAML P; LEIGHTON S; TORHORST J; MIHATSCH MJ; SAUTER G; KALLIONIEMI OP
    TISSUE MICROARRAYS FOR HIGH-THROUGHPUT MOLECULAR PROFILING OF TUMOR SPECIMENS
    Nature medicine
    
    J. Kononen et al., "TISSUE MICROARRAYS FOR HIGH-THROUGHPUT MOLECULAR PROFILING OF TUMOR SPECIMENS", Nature medicine, 4(7), 1998, pp. 844-847
27. FOROZAN F; KARHU R; KONONEN J; KALLIONIEMI A; KALLIONIEMI OP
    GENOME SCREENING BY COMPARATIVE GENOMIC HYBRIDIZATION
    Trends in genetics
    
    F. Forozan et al., "GENOME SCREENING BY COMPARATIVE GENOMIC HYBRIDIZATION", Trends in genetics, 13(10), 1997, pp. 405-409
28. ANZICK SL; KONONEN J; WALKER RL; AZORSA DO; TANNER MM; GUAN XY; SAUTER G; KALLIONIEMI OP; TRENT JM; MELTZER PS
    AIB1, A STEROID-RECEPTOR COACTIVATOR AMPLIFIED IN BREAST AND OVARIAN-CANCER
    Science
    
    S.L. Anzick et al., "AIB1, A STEROID-RECEPTOR COACTIVATOR AMPLIFIED IN BREAST AND OVARIAN-CANCER", Science, 277(5328), 1997, pp. 965-968
29. KOIVISTO P; KONONEN J; PALMBERG C; TAMMELA T; HYYTINEN E; ISOLA J; TRAPMAN J; CLEUTJENS K; NOORDZIJ A; VISAKORPI T; KALLIONIEMI OP
    ANDROGEN RECEPTOR GENE AMPLIFICATION - A POSSIBLE MOLECULAR MECHANISMFOR ANDROGEN DEPRIVATION THERAPY FAILURE IN PROSTATE-CANCER
    Cancer research
    
    P. Koivisto et al., "ANDROGEN RECEPTOR GENE AMPLIFICATION - A POSSIBLE MOLECULAR MECHANISMFOR ANDROGEN DEPRIVATION THERAPY FAILURE IN PROSTATE-CANCER", Cancer research, 57(2), 1997, pp. 314-319
30. SALLINEN SL; SALLINEN P; HAAPASALO H; KONONEN J; KARHU R; HELEN P; ISOLA J
    ACCUMULATION OF GENETIC CHANGES IS ASSOCIATED WITH POOR-PROGNOSIS IN GRADE-II ASTROCYTOMAS
    The American journal of pathology
    
    S.L. Sallinen et al., "ACCUMULATION OF GENETIC CHANGES IS ASSOCIATED WITH POOR-PROGNOSIS IN GRADE-II ASTROCYTOMAS", The American journal of pathology, 151(6), 1997, pp. 1799-1807
31. SALLINEN P; MIETTINEN H; SALLINEN SL; HAAPASALO H; HELIN H; KONONEN J
    INCREASED EXPRESSION OF TELOMERASE RNA COMPONENT IS ASSOCIATED WITH INCREASED CELL-PROLIFERATION IN HUMAN ASTROCYTOMAS
    The American journal of pathology
    
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32. KAINU T; TIRKKONEN M; KONONEN J; JOHANSSON O; LOMAN N; OLSSON H; SYRJAKOSKI K; EEROLA HL; HEIKKILA P; PYRHONEN S; AGNARSSON BA; EGILSSON V; BARKARDOTTIR R; NEVANLINNA H; BORG A; KALLIONIEMI OP
    SOMATIC GENETIC AND PHENOTYPIC CHARACTERISTICS OF HEREDITARY BREAST-CANCER
    American journal of human genetics
    
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33. KALLIONIEMI A; BARLUND M; KONONEN J; FOROZAN F; PARSA NZ; SAUTER G; KALLIONIEMI OP
    CONTIG ASSEMBLY AND IDENTIFICATION OF POSITIONAL CANDIDATE GENES AND ESTS AT 17Q23, A NOVEL RECURRENT DNA AMPLIFICATION SITE IN HUMAN BREAST-CANCER
    American journal of human genetics
    
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34. KAINU T; KONONEN J; ENMARK E; GUSTAFSSON JA; PELTOHUIKKO M
    LOCALIZATION AND ONTOGENY OF THE ORPHAN RECEPTOR OR-1 IN THE RAT-BRAIN
    Journal of molecular neuroscience
    
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35. KUUKASJARVI T; KONONEN J; HELIN H; HOLLI K; ISOLA J
    LOSS OF ESTROGEN-RECEPTOR IN RECURRENT BREAST-CANCER IS ASSOCIATED WITH POOR RESPONSE TO ENDOCRINE THERAPY
    Journal of clinical oncology
    
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36. KAINU T; KONONEN J; JOHANSSON O; OLSSON H; BORG A; ISOLA J
    DETECTION OF GERMLINE BRCA1 MUTATIONS IN BREAST-CANCER PATIENTS BY QUANTITATIVE MESSENGER-RNA IN-SITU HYBRIDIZATION
    Cancer research
    
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37. JARVINEN TAH; KONONEN J; PELTOHUIKKO M; ISOLA J
    EXPRESSION OF TOPOISOMERASE II-ALPHA IS ASSOCIATED WITH RAPID CELL-PROLIFERATION, ANEUPLOIDY, AND C-ERBB2 OVEREXPRESSION IN BREAST-CANCER
    The American journal of pathology
    
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38. KONONEN J; HOKFELT T; PELTOHUIKKO M
    EFFECTS OF AGING ON THE EXPRESSION OF NEUROTROPHINS AND THEIR RECEPTORS IN THE RAT PITUITARY-GLAND
    NeuroReport
    
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39. PELTOHUIKKO M; DAGERLIND A; KONONEN J; LUNDBERG JM; VILLAR M; KOISTINAHO J; BRAVO R; HOKFELT T
    NEURONAL REGULATION OF C-FOS, C-JUN, AND JUNB IMMEDIATE-EARLY GENES IN RAT ADRENAL-MEDULLA
    The Journal of neuroscience
    
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40. SCHULTZ R; KONONEN J; PELTOHUIKKO M
    INDUCTION OF IMMEDIATE-EARLY GENE MESSENGER-RNAS AND PROTEINS BY HCG IN INTERSTITIAL-CELLS OF RAT TESTIS
    Journal of Endocrinology
    
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41. MIETTINEN H; KONONEN J; HAAPASALO H; HELEN P; SALLINEN P; HARJUNTAUSTA T; HELIN H; ALHO H
    EXPRESSION OF PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR AND DIAZEPAM-BINDING INHIBITOR IN HUMAN ASTROCYTOMAS - RELATIONSHIP TO CELL-PROLIFERATION
    Cancer research
    
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42. KONONEN J; SOINILA S; PERSSON H; HONKANIEMI J; HOKFELT T; PELTOHUIKKO M
    NEUROTROPHINS AND THEIR RECEPTORS IN THE RAT PITUITARY-GLAND - REGULATION OF BDNF AND TRKB MESSENGER-RNA LEVELS BY ADRENAL HORMONES
    Molecular brain research
    
    J. Kononen et al., "NEUROTROPHINS AND THEIR RECEPTORS IN THE RAT PITUITARY-GLAND - REGULATION OF BDNF AND TRKB MESSENGER-RNA LEVELS BY ADRENAL HORMONES", Molecular brain research, 27(2), 1994, pp. 347-354
43. HONKANIEMI J; KONONEN J; KAINU T; PYYKONEN I; PELTOHUIKKO M
    INDUCTION OF MULTIPLE IMMEDIATE-EARLY GENES IN RAT HYPOTHALAMIC PARAVENTRICULAR NUCLEUS AFTER STRESS
    Molecular brain research
    
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44. KONONEN J; PAAVOLA M; PENTTILA TL; PARVINEN M; PELTOHUIKKO M
    STAGE-SPECIFIC EXPRESSION OF PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE (PACAP) MESSENGER-RNA IN THE RAT SEMINIFEROUS TUBULES
    Endocrinology
    
    J. Kononen et al., "STAGE-SPECIFIC EXPRESSION OF PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE (PACAP) MESSENGER-RNA IN THE RAT SEMINIFEROUS TUBULES", Endocrinology, 135(5), 1994, pp. 2291-2294
45. KONONEN J; HONKANIEMI J; GUSTAFSSON JA; PELTOHUIKKO M
    GLUCOCORTICOID RECEPTOR COLOCALIZATION WITH PITUITARY-HORMONES IN THERAT PITUITARY-GLAND
    Molecular and cellular endocrinology
    
    J. Kononen et al., "GLUCOCORTICOID RECEPTOR COLOCALIZATION WITH PITUITARY-HORMONES IN THERAT PITUITARY-GLAND", Molecular and cellular endocrinology, 93(1), 1993, pp. 97-103