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Titolo:
A normalized root-mean-square distance for comparing protein three-dimensional structures
Autore:
Carugo, O; Pongor, S;
Indirizzi:
Int Ctr Genet Engn & Biotechnol, Prot Struct & Funct Grp, I-34012 Trieste,Italy Int Ctr Genet Engn & Biotechnol Trieste Italy I-34012 4012 Trieste,Italy Univ Pavia, Dept Gen Chem, I-27100 Pavia, Italy Univ Pavia Pavia Italy I-27100 avia, Dept Gen Chem, I-27100 Pavia, Italy
Titolo Testata:
PROTEIN SCIENCE
fascicolo: 7, volume: 10, anno: 2001,
pagine: 1470 - 1473
SICI:
0961-8368(200107)10:7<1470:ANRDFC>2.0.ZU;2-O
Fonte:
ISI
Lingua:
ENG
Soggetto:
RELATE 2 SETS; ROTATION; VECTORS;
Keywords:
root-mean-square distance; structure classification; structure comparison; three-dimensional similarity;
Tipo documento:
Article
Natura:
Periodico
Settore Disciplinare:
Life Sciences
Citazioni:
11
Recensione:
Indirizzi per estratti:
Indirizzo: Carugo, O Int Ctr Genet Engn & Biotechnol, Prot Struct & Funct Grp, Area Sci Pk,Padriciano 99, I-34012 Trieste, Italy Int Ctr Genet Engn & BiotechnolArea Sci Pk,Padriciano 99 Trieste Italy I-34012
Citazione:
O. Carugo e S. Pongor, "A normalized root-mean-square distance for comparing protein three-dimensional structures", PROTEIN SCI, 10(7), 2001, pp. 1470-1473

Abstract

The degree of similarity of two protein three-dimensional structures is usually measured with the root-mean-square distance between equivalent atom pairs. Such a similarity measure depends on the dimension of the proteins, that is, on the number of equivalent atom pairs. The present communication presents a simple procedure to make the root-mean-square distances between pairs of three-dimensional structures independent of their dimensions. This normalization may be useful in evolutionary and fold classification studiesas well as in simple comparisons between different structural models.

ASDD Area Sistemi Dipartimentali e Documentali, Università di Bologna, Catalogo delle riviste ed altri periodici
Documento generato il 11/07/20 alle ore 20:59:07